Gene annotation
Transcriptome id Sobic.009G087000.1
Synonym MCM6, Sb09g008010
Functional annotation MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed
UniProt C5YV76
Pfam PF14551 PF00493
Panther DB PTHR11630
NCBI CDD -
KEGG Orthology K02542; DNA replication licensing factor MCM6
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G44635 : minichromosome maintenance (MCM2/3/5) family protein
RAP-DB (Rice) LOC_Os05g14590.1 : MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed
MaizeGDB (Corn) Zm00025a037559 , Zm00025a043215
Brachypodium KQK06938
Barley HORVU5Hr1G007820.1 , HORVU5Hr1G007820.2 , HORVU5Hr1G007820.3 , HORVU5Hr1G007820.4 , HORVU5Hr1G007820.5 , HORVU5Hr1G007820.6 , HORVU5Hr1G007820.7 , HORVU5Hr1G007820.8 , HORVU5Hr1G007820.9 , HORVU0Hr1G023610.1 , HORVU0Hr1G023260.1 , HORVU1Hr1G029770.16 , HORVU1Hr1G029770.17 , HORVU1Hr1G029770.14 , HORVU1Hr1G029770.15 , HORVU1Hr1G029770.12 , HORVU1Hr1G029770.13 , HORVU1Hr1G029770.10 , HORVU1Hr1G029770.11 , HORVU1Hr1G029770.18 , HORVU1Hr1G029770.19 , HORVU1Hr1G029770.23 , HORVU1Hr1G029770.22 , HORVU5Hr1G007820.12 , HORVU5Hr1G007820.10 , HORVU5Hr1G007820.11 , HORVU1Hr1G029770.4 , HORVU1Hr1G029770.5 , HORVU1Hr1G029770.6 , HORVU1Hr1G029770.7 , HORVU1Hr1G029770.1 , HORVU1Hr1G029770.2 , HORVU1Hr1G029770.3 , HORVU1Hr1G029770.8 , HORVU1Hr1G029770.9 , HORVU1Hr1G029770.28 , HORVU1Hr1G029770.27 , HORVU1Hr1G029770.26 , HORVU1Hr1G029770.25 , HORVU1Hr1G029770.24 , HORVU1Hr1G029770.21 , HORVU1Hr1G029770.20
Wheat TraesCS1D02G125300 , TraesCS1B02G146200 , TraesCS1A02G129400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
2 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
3 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
4 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
5 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
6 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
7 Sobic.004G321400 BRUSHY 1, putative, expressed -
8 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
9 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
10 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
11 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
12 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
13 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
14 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
15 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
16 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
17 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
18 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.002G383100 expressed protein -
20 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2


Gene co-expression network
sample Sobic009G087000 Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic009G087000--Sobic010G147700 Sobic003G183700 Sobic003G183700 Sobic009G087000--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic009G087000--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic006G029300--Sobic010G147700 Sobic006G029300--Sobic009G087000 Sobic006G029300--Sobic007G168900 Sobic006G029300--Sobic003G369200 Sobic003G294500 Sobic003G294500 Sobic006G029300--Sobic003G294500 Sobic006G029300--Sobic003G201000 Sobic001G029800 Sobic001G029800 Sobic006G029300--Sobic001G029800 Sobic006G029300--Sobic005G144600 Sobic006G029300--Sobic005G110535 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic003G369200--Sobic009G087000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic003G369200--Sobic006G029300 Sobic003G369200--Sobic007G168900 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic009G172950 Sobic009G172950 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic002G223900 Sobic002G223900 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.