Gene annotation
Transcriptome id Sobic.006G051000.4,Sobic.006G051000.5,Sobic.006G051000.3,Sobic.006G051000.2
Synonym Sb06g013790
Functional annotation POLA3 - Putative DNA polymerase alpha complex subunit, expressed
UniProt A0A1Z5RCA5 , C5YES0
Pfam PF04104
Panther DB PTHR10537 PTHR10537:SF3
NCBI CDD KOG2267; Eukaryotic-type DNA primase, large subunit
KEGG Orthology K02685; DNA primase large subunit
Gene Ontology GO:0006269; DNA replication, synthesis of RNA primer GO:0003896DNA primase activity


Orthologs (automatic annotation)
TAIR AT1G67320 : DNA primase, large subunit family
RAP-DB (Rice) LOC_Os07g22400.1,LOC_Os07g22400.2 : POLA3 - Putative DNA polymerase alpha complex subunit, expressed
MaizeGDB (Corn) Zm00025a053947 , Zm00025a055897
Brachypodium KQJ82268
Barley HORVU2Hr1G069780.18 , HORVU2Hr1G069780.19 , HORVU2Hr1G069780.14 , HORVU2Hr1G069780.15 , HORVU2Hr1G069780.16 , HORVU2Hr1G069780.17 , HORVU2Hr1G069780.10 , HORVU2Hr1G069780.11 , HORVU2Hr1G069780.12 , HORVU2Hr1G069780.13 , HORVU2Hr1G069780.21 , HORVU2Hr1G069780.20 , HORVU2Hr1G069780.23 , HORVU2Hr1G069780.22 , HORVU2Hr1G069780.6 , HORVU2Hr1G069780.7 , HORVU2Hr1G069780.4 , HORVU2Hr1G069780.5 , HORVU2Hr1G069780.2 , HORVU2Hr1G069780.3 , HORVU2Hr1G069780.1 , HORVU2Hr1G069780.8 , HORVU2Hr1G069780.9
Wheat TraesCS2B02G300400 , TraesCS2A02G283300 , TraesCS2D02G282000 , TraesCS2D02G282000
Populus -


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cDNA sequences
Sobic.006G051000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
2 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
3 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
4 Sobic.006G196600 expressed protein -
5 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
6 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
7 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
8 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
9 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
10 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
11 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
12 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
13 Sobic.004G243900 E2F family transcription factor protein, putative, expressed -
14 Sobic.005G157300 protein binding protein, putative, expressed -
15 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
16 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
17 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
18 Sobic.003G055600 expressed protein -
19 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
20 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -


Gene co-expression network
sample Sobic006G051000 Sobic006G051000 Sobic003G183700 Sobic003G183700 Sobic006G051000--Sobic003G183700 Sobic006G195500 Sobic006G195500 Sobic006G051000--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic003G179500 Sobic003G179500 Sobic006G051000--Sobic003G179500 Sobic009G087000 Sobic009G087000 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic008G129200 Sobic008G129200 Sobic006G051000--Sobic008G129200 Sobic005G110535 Sobic005G110535 Sobic006G051000--Sobic005G110535 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic010G147700 Sobic010G147700 Sobic003G183700--Sobic010G147700 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic001G377700 Sobic001G377700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G120600 Sobic006G120600 Sobic006G195500--Sobic006G120600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic010G103700--Sobic006G120600 Sobic010G103700--Sobic006G195500 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G103700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500 Sobic006G196600--Sobic006G051000 Sobic006G196600--Sobic003G183700 Sobic006G196600--Sobic006G195500 Sobic004G317000 Sobic004G317000 Sobic006G196600--Sobic004G317000 Sobic006G196600--Sobic001G377700 Sobic007G187700 Sobic007G187700 Sobic006G196600--Sobic007G187700 Sobic006G275500 Sobic006G275500 Sobic006G196600--Sobic006G275500 Sobic005G157300 Sobic005G157300 Sobic006G196600--Sobic005G157300 Sobic006G196600--Sobic010G103700 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic007G112100 Sobic007G112100 Sobic009G109300--Sobic007G112100 Sobic009G109300--Sobic006G051000 Sobic009G109300--Sobic010G103700 Sobic009G109300--Sobic006G195500 Sobic001G238900 Sobic001G238900 Sobic009G109300--Sobic001G238900 Sobic002G230800 Sobic002G230800 Sobic009G109300--Sobic002G230800 Sobic009G109300--Sobic003G183700 Sobic009G109300--Sobic003G179500 Sobic002G246900 Sobic002G246900 Sobic009G109300--Sobic002G246900 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700
Octagon: transcription factors


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