Gene annotation
Transcriptome id Sobic.004G243900.1
Synonym E2L3, DEL1, Sb04g028440, E2FE
Functional annotation E2F family transcription factor protein, putative, expressed
UniProt A0A194YRD5
Pfam PF02319
Panther DB PTHR12081 PTHR12081:SF7
NCBI CDD KOG2578; Transcription factor E2F/dimerization partner (TDP)-like proteins
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005667transcription regulator complex GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G48160 : DP-E2F-like 1
RAP-DB (Rice) LOC_Os02g50630.1 : E2F family transcription factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a033238 , Zm00025a021980
Brachypodium -
Barley HORVU6Hr1G076770.7 , HORVU7Hr1G040420.19 , HORVU7Hr1G040420.18 , HORVU7Hr1G040420.17 , HORVU7Hr1G040420.16 , HORVU7Hr1G040420.15 , HORVU7Hr1G040420.14 , HORVU7Hr1G040420.13 , HORVU7Hr1G040420.12 , HORVU7Hr1G040420.11 , HORVU7Hr1G040420.10 , HORVU6Hr1G076770.3 , HORVU6Hr1G076770.2 , HORVU7Hr1G040420.24 , HORVU7Hr1G040420.22 , HORVU7Hr1G040420.23 , HORVU7Hr1G040420.20 , HORVU7Hr1G040420.21 , HORVU7Hr1G040420.7 , HORVU7Hr1G040420.6 , HORVU7Hr1G040420.5 , HORVU7Hr1G040420.4 , HORVU7Hr1G040420.3 , HORVU7Hr1G040420.2 , HORVU7Hr1G040420.1 , HORVU7Hr1G040420.9 , HORVU7Hr1G040420.8 , HORVU6Hr1G076770.6 , HORVU6Hr1G076770.4 , HORVU6Hr1G076770.1 , HORVU6Hr1G076770.9 , HORVU6Hr1G076770.8 , HORVU6Hr1G076770.17 , HORVU6Hr1G076770.16 , HORVU6Hr1G076770.15 , HORVU6Hr1G076770.14 , HORVU6Hr1G076770.13 , HORVU6Hr1G076770.12 , HORVU6Hr1G076770.11 , HORVU6Hr1G076770.10 , HORVU6Hr1G076770.5
Wheat TraesCS6D02G291000 , TraesCS6D02G291000 , TraesCS7D02G199600 , TraesCS7D02G199600 , TraesCS7A02G238500 , TraesCS7A02G238500 , TraesCS6B02G341900 , TraesCS6B02G341900 , TraesCS7B02G103500 , TraesCS7B02G103500 , TraesCS6A02G311700 , TraesCS6A02G311700 , TraesCS6A02G311700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
2 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
3 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
4 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
5 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
6 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
8 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
9 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
10 Sobic.005G157300 protein binding protein, putative, expressed -
11 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
12 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
13 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
14 Sobic.002G215200 lung seven transmembrane domain containing protein, putative, expressed -
15 Sobic.006G196600 expressed protein -
16 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
17 Sobic.002G383100 expressed protein -
18 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
19 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
20 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3


Gene co-expression network
sample Sobic004G243900 Sobic004G243900 Sobic009G087000 Sobic009G087000 Sobic004G243900--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic004G243900--Sobic003G183700 Sobic003G179500 Sobic003G179500 Sobic004G243900--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic004G243900--Sobic006G051000 Sobic005G110535 Sobic005G110535 Sobic004G243900--Sobic005G110535 Sobic003G292700 Sobic003G292700 Sobic004G243900--Sobic003G292700 Sobic010G147700 Sobic010G147700 Sobic004G243900--Sobic010G147700 Sobic003G289800 Sobic003G289800 Sobic004G243900--Sobic003G289800 Sobic008G129200 Sobic008G129200 Sobic004G243900--Sobic008G129200 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic006G116500 Sobic006G116500 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic003G420300 Sobic003G420300 Sobic003G292700--Sobic003G420300 Sobic003G226700 Sobic003G226700 Sobic003G292700--Sobic003G226700 Sobic009G202801 Sobic009G202801 Sobic003G292700--Sobic009G202801 Sobic001G054700 Sobic001G054700 Sobic003G292700--Sobic001G054700 Sobic006G142500 Sobic006G142500 Sobic003G292700--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic003G292700--Sobic003G032200 Sobic003G292700--Sobic001G377700 Sobic002G021200 Sobic002G021200 Sobic003G292700--Sobic002G021200 Sobic008G083500 Sobic008G083500 Sobic003G292700--Sobic008G083500 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic003G289800--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic003G289800--Sobic001G051300 Sobic003G289800--Sobic003G183700 Sobic003G289800--Sobic003G420300 Sobic003G289800--Sobic003G179500 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic003G289800--Sobic010G147700 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500
Octagon: transcription factors


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