Gene annotation
Transcriptome id Sobic.008G129200.1
Synonym PRL, MCM7, Sb08g018160
Functional annotation MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed
UniProt A0A1B6PDC2
Pfam PF14551 PF00493
Panther DB PTHR11630 PTHR11630:SF26
NCBI CDD -
KEGG Orthology K02210; MCM7, DNA replication licensing factor MCM7
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0003677DNA binding GO:0006270DNA replication initiation GO:0005634nucleus GO:0003678DNA helicase activity


Orthologs (automatic annotation)
TAIR AT4G02060 : Minichromosome maintenance (MCM2/3/5) family protein
RAP-DB (Rice) LOC_Os12g37400.1 : MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed
MaizeGDB (Corn) Zm00025a025476 , Zm00025a004133
Brachypodium KQJ86331
Barley HORVU5Hr1G028260.1 , HORVU5Hr1G028260.2
Wheat TraesCS5B02G094600 , TraesCS5B02G094600 , TraesCS5D02G100800 , TraesCS5D02G100800 , TraesCS5A02G088400 , TraesCS5A02G088400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
4 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
6 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
7 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
8 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
9 Sobic.006G116500 expressed protein -
10 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
11 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
12 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
13 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
14 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
15 Sobic.001G013400 nuf2 family protein, expressed -
16 Sobic.002G272300 expressed protein -
17 Sobic.004G321400 BRUSHY 1, putative, expressed -
18 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
19 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
20 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic008G129200 Sobic008G129200 Sobic004G331600 Sobic004G331600 Sobic008G129200--Sobic004G331600 Sobic009G087000 Sobic009G087000 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic010G147700 Sobic010G147700 Sobic008G129200--Sobic010G147700 Sobic003G183700 Sobic003G183700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic002G223900 Sobic002G223900 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G105800 Sobic001G105800 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic010G054600--Sobic004G331600 Sobic010G054600--Sobic001G142000 Sobic010G054600--Sobic008G129200 Sobic004G119700 Sobic004G119700 Sobic010G054600--Sobic004G119700 Sobic010G054600--Sobic001G456500 Sobic010G054600--Sobic003G201000 Sobic003G361200 Sobic003G361200 Sobic010G054600--Sobic003G361200 Sobic010G054600--Sobic010G147700 Sobic010G054600--Sobic009G087000 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100
Octagon: transcription factors


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