Gene annotation
Transcriptome id Sobic.002G223900.1
Synonym Sb02g026460
Functional annotation OsFBX330 - F-box domain containing protein, expressed
UniProt A0A1W0W5J3
Pfam PF12937
Panther DB PTHR32212 PTHR32212:SF82
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G10780 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os09g28120.1 : OsFBX330 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005398 , Zm00025a014028 , Zm00025a030628
Brachypodium KQJ90501
Barley HORVU5Hr1G068010.6 , HORVU5Hr1G068010.4 , HORVU5Hr1G068010.5 , HORVU5Hr1G068010.2 , HORVU5Hr1G068010.3 , HORVU5Hr1G068010.1
Wheat TraesCS5D02G243500 , TraesCS5B02G235000 , TraesCS5A02G236500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
3 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
4 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
5 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
6 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
7 Sobic.006G116500 expressed protein -
8 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
9 Sobic.003G387700 expressed protein -
10 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
11 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
12 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
13 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
14 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
15 Sobic.002G272300 expressed protein -
16 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
17 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
18 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
19 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
20 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic002G223900 Sobic002G223900 Sobic001G456500 Sobic001G456500 Sobic002G223900--Sobic001G456500 Sobic001G083300 Sobic001G083300 Sobic002G223900--Sobic001G083300 Sobic001G105800 Sobic001G105800 Sobic002G223900--Sobic001G105800 Sobic004G331600 Sobic004G331600 Sobic002G223900--Sobic004G331600 Sobic007G007800 Sobic007G007800 Sobic002G223900--Sobic007G007800 Sobic008G129200 Sobic008G129200 Sobic002G223900--Sobic008G129200 Sobic006G116500 Sobic006G116500 Sobic002G223900--Sobic006G116500 Sobic003G183700 Sobic003G183700 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G142000 Sobic001G142000 Sobic001G456500--Sobic001G142000 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic001G083300--Sobic001G456500 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic010G147700 Sobic010G147700 Sobic001G083300--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic009G184200 Sobic009G184200 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic010G105400 Sobic010G105400 Sobic001G105800--Sobic010G105400 Sobic009G172950 Sobic009G172950 Sobic001G105800--Sobic009G172950 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic010G054600 Sobic010G054600 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic004G331600--Sobic007G007800 Sobic002G272300 Sobic002G272300 Sobic007G007800--Sobic002G272300 Sobic007G007800--Sobic001G105800 Sobic007G007800--Sobic009G184200 Sobic001G013400 Sobic001G013400 Sobic007G007800--Sobic001G013400 Sobic007G007800--Sobic002G223900 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic007G007800--Sobic001G083300 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic003G179500 Sobic003G179500 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic004G257600 Sobic004G257600 Sobic003G387700--Sobic004G257600 Sobic006G134200 Sobic006G134200 Sobic003G387700--Sobic006G134200 Sobic003G387700--Sobic010G105400 Sobic001G091500 Sobic001G091500 Sobic003G387700--Sobic001G091500 Sobic003G387700--Sobic001G105800 Sobic010G119300 Sobic010G119300 Sobic003G387700--Sobic010G119300 Sobic001G398400 Sobic001G398400 Sobic003G387700--Sobic001G398400 Sobic003G328500 Sobic003G328500 Sobic003G387700--Sobic003G328500 Sobic007G100600 Sobic007G100600 Sobic003G387700--Sobic007G100600
Octagon: transcription factors


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