Gene annotation
Transcriptome id Sobic.001G304800.1,Sobic.001G304800.3,Sobic.001G304800.2
Synonym Sb01g029670
Functional annotation expressed protein
UniProt A0A1B6QM14
Pfam PF12043
Panther DB PTHR31390 PTHR31390:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11450 : Protein of unknown function (DUF3527)
RAP-DB (Rice) LOC_Os10g40324.1 : expressed protein
MaizeGDB (Corn) Zm00025a003282
Brachypodium PNT67851
Barley -
Wheat TraesCS1A02G209000 , TraesCS1A02G209000 , TraesCS1D02G212300 , TraesCS1D02G212300 , TraesCS1B02G223200 , TraesCS1B02G223200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
2 Sobic.002G286700 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
3 Sobic.008G083500 expressed protein -
4 Sobic.009G101100 patellin protein, putative, expressed -
5 Sobic.006G105600 "domain confirmed by Pfam database, expression is supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
6 Sobic.007G218100 transmembrane receptor, putative, expressed -
7 Sobic.003G246800 GATA zinc finger domain containing protein, expressed -
8 Sobic.009G146250 - -
9 Sobic.006G124400 ATP binding protein, putative, expressed -
10 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
11 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
12 Sobic.004G052200 expressed protein -
13 Sobic.004G233700 glycosyl hydrolase family 3 protein, putative, expressed -
14 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
15 Sobic.003G043900 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
16 Sobic.001G260701 -(PubMedID : 26976818) -
17 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
18 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
19 Sobic.006G196600 expressed protein -
20 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11


Gene co-expression network
sample Sobic001G304800 Sobic001G304800 Sobic002G296000 Sobic002G296000 Sobic001G304800--Sobic002G296000 Sobic002G286700 Sobic002G286700 Sobic001G304800--Sobic002G286700 Sobic008G083500 Sobic008G083500 Sobic001G304800--Sobic008G083500 Sobic009G101100 Sobic009G101100 Sobic001G304800--Sobic009G101100 Sobic006G105600 Sobic006G105600 Sobic001G304800--Sobic006G105600 Sobic007G218100 Sobic007G218100 Sobic001G304800--Sobic007G218100 Sobic003G246800 Sobic003G246800 Sobic001G304800--Sobic003G246800 Sobic009G146250 Sobic009G146250 Sobic001G304800--Sobic009G146250 Sobic006G124400 Sobic006G124400 Sobic001G304800--Sobic006G124400 Sobic007G027900 Sobic007G027900 Sobic002G296000--Sobic007G027900 Sobic002G296000--Sobic006G124400 Sobic002G296000--Sobic009G101100 Sobic007G168900 Sobic007G168900 Sobic002G296000--Sobic007G168900 Sobic005G005700 Sobic005G005700 Sobic002G296000--Sobic005G005700 Sobic008G006800 Sobic008G006800 Sobic002G296000--Sobic008G006800 Sobic004G271300 Sobic004G271300 Sobic002G296000--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic002G296000--Sobic010G017400 Sobic002G296000--Sobic008G083500 Sobic008G190000 Sobic008G190000 Sobic002G286700--Sobic008G190000 Sobic002G286700--Sobic001G304800 Sobic002G286700--Sobic003G246800 Sobic002G286700--Sobic008G083500 Sobic002G286700--Sobic002G296000 Sobic002G286700--Sobic009G101100 Sobic001G461800 Sobic001G461800 Sobic002G286700--Sobic001G461800 Sobic002G286700--Sobic006G105600 Sobic003G032200 Sobic003G032200 Sobic002G286700--Sobic003G032200 Sobic008G083500--Sobic002G296000 Sobic003G420300 Sobic003G420300 Sobic008G083500--Sobic003G420300 Sobic010G024500 Sobic010G024500 Sobic008G083500--Sobic010G024500 Sobic008G083500--Sobic006G105600 Sobic008G083500--Sobic001G304800 Sobic008G083500--Sobic009G101100 Sobic008G083500--Sobic002G286700 Sobic003G292700 Sobic003G292700 Sobic008G083500--Sobic003G292700 Sobic001G054700 Sobic001G054700 Sobic008G083500--Sobic001G054700 Sobic009G101100--Sobic002G296000 Sobic009G101100--Sobic006G124400 Sobic009G101100--Sobic007G027900 Sobic009G101100--Sobic003G032200 Sobic006G221300 Sobic006G221300 Sobic009G101100--Sobic006G221300 Sobic009G101100--Sobic001G304800 Sobic009G101100--Sobic008G083500 Sobic009G101100--Sobic006G105600 Sobic010G105400 Sobic010G105400 Sobic009G101100--Sobic010G105400 Sobic005G091000 Sobic005G091000 Sobic006G105600--Sobic005G091000 Sobic001G267100 Sobic001G267100 Sobic006G105600--Sobic001G267100 Sobic006G105600--Sobic006G124400 Sobic006G105600--Sobic002G296000 Sobic009G137500 Sobic009G137500 Sobic006G105600--Sobic009G137500 Sobic002G394500 Sobic002G394500 Sobic006G105600--Sobic002G394500 Sobic004G233700 Sobic004G233700 Sobic006G105600--Sobic004G233700 Sobic006G105600--Sobic008G083500 Sobic006G105600--Sobic001G304800 Sobic001G532800 Sobic001G532800 Sobic007G218100--Sobic001G532800 Sobic007G218100--Sobic001G304800 Sobic004G052200 Sobic004G052200 Sobic007G218100--Sobic004G052200 Sobic002G230800 Sobic002G230800 Sobic007G218100--Sobic002G230800 Sobic007G218100--Sobic003G246800 Sobic006G275500 Sobic006G275500 Sobic007G218100--Sobic006G275500 Sobic002G392500 Sobic002G392500 Sobic007G218100--Sobic002G392500 Sobic001G104500 Sobic001G104500 Sobic007G218100--Sobic001G104500 Sobic008G159901 Sobic008G159901 Sobic007G218100--Sobic008G159901 Sobic003G246800--Sobic002G286700 Sobic003G246800--Sobic001G304800 Sobic003G246800--Sobic007G218100 Sobic003G246800--Sobic006G105600 Sobic003G246800--Sobic009G101100 Sobic003G246800--Sobic010G024500 Sobic003G246800--Sobic008G190000 Sobic003G246800--Sobic008G083500 Sobic003G246800--Sobic002G296000 Sobic004G156200 Sobic004G156200 Sobic009G146250--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic009G146250--Sobic006G195500 Sobic002G021200 Sobic002G021200 Sobic009G146250--Sobic002G021200 Sobic009G146250--Sobic006G275500 Sobic006G120600 Sobic006G120600 Sobic009G146250--Sobic006G120600 Sobic007G187700 Sobic007G187700 Sobic009G146250--Sobic007G187700 Sobic009G146250--Sobic001G304800 Sobic005G068800 Sobic005G068800 Sobic009G146250--Sobic005G068800 Sobic001G377700 Sobic001G377700 Sobic009G146250--Sobic001G377700 Sobic006G124400--Sobic002G296000 Sobic006G124400--Sobic010G105400 Sobic006G124400--Sobic009G101100 Sobic006G124400--Sobic007G027900 Sobic004G273000 Sobic004G273000 Sobic006G124400--Sobic004G273000 Sobic006G124400--Sobic005G005700 Sobic006G124400--Sobic008G006800 Sobic001G477400 Sobic001G477400 Sobic006G124400--Sobic001G477400 Sobic001G398400 Sobic001G398400 Sobic006G124400--Sobic001G398400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.