Gene annotation
Transcriptome id Sobic.008G090000.1
Synonym ORP1D, Sb08g011100
Functional annotation oxysterol-binding protein, putative, expressed
UniProt A0A1B6PCG6
Pfam PF15413 PF01237
Panther DB PTHR10972 PTHR10972:SF67
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13170 : OSBP(oxysterol binding protein)-related protein 1D
RAP-DB (Rice) LOC_Os12g18770.1 : oxysterol-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a004114 , Zm00025a003305
Brachypodium KQJ91672
Barley -
Wheat TraesCS5D02G120100 , TraesCS5D02G120100 , TraesCS5A02G117800 , TraesCS5B02G116700
Populus -


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cDNA sequences
Sobic.008G090000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
2 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
3 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
4 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
5 Sobic.008G083500 expressed protein -
6 Sobic.009G146250 - -
7 Sobic.002G168000 expressed protein -
8 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
9 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
10 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
11 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
12 Sobic.001G304800 expressed protein -
13 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
14 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
16 Sobic.006G071628 - -
17 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
18 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
19 Sobic.001G290500 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
20 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic008G090000 Sobic008G090000 Sobic006G275500 Sobic006G275500 Sobic008G090000--Sobic006G275500 Sobic003G147500 Sobic003G147500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic006G016700 Sobic006G016700 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic009G146250 Sobic009G146250 Sobic008G090000--Sobic009G146250 Sobic002G168000 Sobic002G168000 Sobic008G090000--Sobic002G168000 Sobic009G188900 Sobic009G188900 Sobic008G090000--Sobic009G188900 Sobic002G362200 Sobic002G362200 Sobic008G090000--Sobic002G362200 Sobic006G275500--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic006G275500--Sobic003G147500 Sobic007G187700 Sobic007G187700 Sobic006G275500--Sobic007G187700 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic006G275500--Sobic009G146250 Sobic003G147500--Sobic006G016700 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic003G147500--Sobic008G090000 Sobic010G250400 Sobic010G250400 Sobic003G147500--Sobic010G250400 Sobic003G147500--Sobic002G168000 Sobic007G219100 Sobic007G219100 Sobic003G147500--Sobic007G219100 Sobic004G123200 Sobic004G123200 Sobic003G147500--Sobic004G123200 Sobic003G147500--Sobic009G146250 Sobic004G315700 Sobic004G315700 Sobic006G084300--Sobic004G315700 Sobic001G199500 Sobic001G199500 Sobic006G084300--Sobic001G199500 Sobic006G084300--Sobic008G090000 Sobic009G212100 Sobic009G212100 Sobic006G084300--Sobic009G212100 Sobic006G071628 Sobic006G071628 Sobic006G084300--Sobic006G071628 Sobic001G425700 Sobic001G425700 Sobic006G084300--Sobic001G425700 Sobic003G104100 Sobic003G104100 Sobic006G084300--Sobic003G104100 Sobic006G281900 Sobic006G281900 Sobic006G084300--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic006G084300--Sobic003G024000 Sobic006G016700--Sobic003G147500 Sobic006G016700--Sobic006G275500 Sobic002G256900 Sobic002G256900 Sobic006G016700--Sobic002G256900 Sobic006G226000 Sobic006G226000 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic006G016700--Sobic002G168000 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic002G296000 Sobic002G296000 Sobic008G083500--Sobic002G296000 Sobic003G420300 Sobic003G420300 Sobic008G083500--Sobic003G420300 Sobic010G024500 Sobic010G024500 Sobic008G083500--Sobic010G024500 Sobic006G105600 Sobic006G105600 Sobic008G083500--Sobic006G105600 Sobic001G304800 Sobic001G304800 Sobic008G083500--Sobic001G304800 Sobic009G101100 Sobic009G101100 Sobic008G083500--Sobic009G101100 Sobic002G286700 Sobic002G286700 Sobic008G083500--Sobic002G286700 Sobic003G292700 Sobic003G292700 Sobic008G083500--Sobic003G292700 Sobic001G054700 Sobic001G054700 Sobic008G083500--Sobic001G054700 Sobic004G156200 Sobic004G156200 Sobic009G146250--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic009G146250--Sobic006G195500 Sobic002G021200 Sobic002G021200 Sobic009G146250--Sobic002G021200 Sobic009G146250--Sobic006G275500 Sobic006G120600 Sobic006G120600 Sobic009G146250--Sobic006G120600 Sobic009G146250--Sobic007G187700 Sobic009G146250--Sobic001G304800 Sobic005G068800 Sobic005G068800 Sobic009G146250--Sobic005G068800 Sobic001G377700 Sobic001G377700 Sobic009G146250--Sobic001G377700 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G168000--Sobic002G021200 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic009G188900--Sobic002G168000 Sobic009G188900--Sobic010G250400 Sobic009G188900--Sobic006G281900 Sobic009G188900--Sobic001G199500 Sobic009G188900--Sobic006G275500 Sobic009G188900--Sobic001G425700 Sobic001G290500 Sobic001G290500 Sobic009G188900--Sobic001G290500 Sobic009G188900--Sobic005G153000 Sobic009G188900--Sobic007G187700 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic002G362200--Sobic008G090000 Sobic008G179000 Sobic008G179000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic001G268300 Sobic001G268300 Sobic002G362200--Sobic001G268300 Sobic008G031200 Sobic008G031200 Sobic002G362200--Sobic008G031200 Sobic002G362200--Sobic003G147500
Octagon: transcription factors


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