Gene annotation
Transcriptome id Sobic.006G071628.3,Sobic.006G071628.1,Sobic.006G071628.2
Synonym -
Functional annotation -
UniProt C6JS58 , A0A1Z5RDK2 , A0A109NDB0 , A0A109ND98
Pfam PF04810 PF08033 PF04815 PF04811 PF08033 PF04815 PF04811
Panther DB PTHR13803 PTHR13803:SF10
NCBI CDD KOG1985; Vesicle coat complex COPII, subunit SEC24/subunit SFB2
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT2G27460 : sec23/sec24 transport family protein
RAP-DB (Rice) LOC_Os04g33690.1 : sec23/Sec24 trunk domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056000
Brachypodium KQJ82517
Barley HORVU2Hr1G073110.23 , HORVU2Hr1G073110.22 , HORVU2Hr1G073110.21 , HORVU2Hr1G073110.20 , HORVU2Hr1G073110.25 , HORVU2Hr1G073110.24 , HORVU2Hr1G073110.12 , HORVU2Hr1G073110.13 , HORVU2Hr1G073110.10 , HORVU2Hr1G073110.11 , HORVU2Hr1G073110.16 , HORVU2Hr1G073110.17 , HORVU2Hr1G073110.14 , HORVU2Hr1G073110.15 , HORVU2Hr1G073110.18 , HORVU2Hr1G073110.19 , HORVU2Hr1G073110.8 , HORVU2Hr1G073110.9 , HORVU2Hr1G073110.1 , HORVU2Hr1G073110.2 , HORVU2Hr1G073110.3 , HORVU2Hr1G073110.4 , HORVU2Hr1G073110.5 , HORVU2Hr1G073110.6 , HORVU2Hr1G073110.7
Wheat TraesCS2B02G311600 , TraesCS2D02G292900 , TraesCS2A02G295100 , TraesCS2A02G295100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
2 Sobic.001G051300 BEE 1, putative, expressed -
3 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
4 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
5 Sobic.010G250800 DNA binding protein, putative, expressed -
6 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
7 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
8 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
9 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
10 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
11 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
12 Sobic.009G061000 DNA binding protein, putative, expressed -
13 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
14 Sobic.003G420300 zinc finger protein, putative, expressed -
15 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
16 Sobic.003G017500 TTL1, putative, expressed -
17 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
18 Sobic.002G383100 expressed protein -
19 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
20 Sobic.008G174966 - -


Gene co-expression network
sample Sobic006G071628 Sobic006G071628 Sobic009G052100 Sobic009G052100 Sobic006G071628--Sobic009G052100 Sobic001G051300 Sobic001G051300 Sobic006G071628--Sobic001G051300 Sobic006G084300 Sobic006G084300 Sobic006G071628--Sobic006G084300 Sobic007G173000 Sobic007G173000 Sobic006G071628--Sobic007G173000 Sobic010G250800 Sobic010G250800 Sobic006G071628--Sobic010G250800 Sobic001G199500 Sobic001G199500 Sobic006G071628--Sobic001G199500 Sobic004G156200 Sobic004G156200 Sobic006G071628--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic006G071628--Sobic001G507200 Sobic001G296800 Sobic001G296800 Sobic006G071628--Sobic001G296800 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic009G052100--Sobic004G156200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic009G052100--Sobic006G071628 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300 Sobic003G289800 Sobic003G289800 Sobic001G051300--Sobic003G289800 Sobic002G383100 Sobic002G383100 Sobic001G051300--Sobic002G383100 Sobic007G139500 Sobic007G139500 Sobic001G051300--Sobic007G139500 Sobic009G087000 Sobic009G087000 Sobic001G051300--Sobic009G087000 Sobic001G051300--Sobic006G071628 Sobic003G179500 Sobic003G179500 Sobic001G051300--Sobic003G179500 Sobic010G147700 Sobic010G147700 Sobic001G051300--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic006G084300--Sobic004G315700 Sobic006G084300--Sobic001G199500 Sobic008G090000 Sobic008G090000 Sobic006G084300--Sobic008G090000 Sobic009G212100 Sobic009G212100 Sobic006G084300--Sobic009G212100 Sobic006G084300--Sobic006G071628 Sobic001G425700 Sobic001G425700 Sobic006G084300--Sobic001G425700 Sobic003G104100 Sobic003G104100 Sobic006G084300--Sobic003G104100 Sobic006G281900 Sobic006G281900 Sobic006G084300--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic006G084300--Sobic003G024000 Sobic007G173000--Sobic006G071628 Sobic007G173000--Sobic001G051300 Sobic001G196000 Sobic001G196000 Sobic007G173000--Sobic001G196000 Sobic007G173000--Sobic007G139500 Sobic005G129201 Sobic005G129201 Sobic007G173000--Sobic005G129201 Sobic002G232400 Sobic002G232400 Sobic007G173000--Sobic002G232400 Sobic009G061000 Sobic009G061000 Sobic007G173000--Sobic009G061000 Sobic002G370400 Sobic002G370400 Sobic007G173000--Sobic002G370400 Sobic009G256700 Sobic009G256700 Sobic007G173000--Sobic009G256700 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic001G199500--Sobic006G084300 Sobic001G199500--Sobic003G024000 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic001G199500--Sobic007G006800 Sobic001G199500--Sobic006G071628 Sobic003G144000 Sobic003G144000 Sobic001G199500--Sobic003G144000 Sobic005G110535 Sobic005G110535 Sobic004G156200--Sobic005G110535 Sobic005G068800 Sobic005G068800 Sobic004G156200--Sobic005G068800 Sobic003G423600 Sobic003G423600 Sobic004G156200--Sobic003G423600 Sobic002G290000 Sobic002G290000 Sobic004G156200--Sobic002G290000 Sobic004G156200--Sobic009G087000 Sobic006G281400 Sobic006G281400 Sobic004G156200--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic004G156200--Sobic003G369200 Sobic009G146250 Sobic009G146250 Sobic004G156200--Sobic009G146250 Sobic004G156200--Sobic009G052100 Sobic001G507200--Sobic009G052100 Sobic001G507200--Sobic009G049200 Sobic006G173200 Sobic006G173200 Sobic001G507200--Sobic006G173200 Sobic001G507200--Sobic004G315700 Sobic001G507200--Sobic006G071628 Sobic001G507200--Sobic001G296800 Sobic001G507200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900 Sobic001G296800--Sobic009G212100 Sobic001G296800--Sobic004G315700 Sobic010G103500 Sobic010G103500 Sobic001G296800--Sobic010G103500 Sobic001G487200 Sobic001G487200 Sobic001G296800--Sobic001G487200 Sobic004G129500 Sobic004G129500 Sobic001G296800--Sobic004G129500 Sobic001G361200 Sobic001G361200 Sobic001G296800--Sobic001G361200 Sobic001G296800--Sobic002G370400 Sobic001G212600 Sobic001G212600 Sobic001G296800--Sobic001G212600 Sobic001G296800--Sobic009G052100
Octagon: transcription factors


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