Gene annotation
Transcriptome id Sobic.010G252700.1
Synonym APC2, Sb10g029080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cullin family domain containing protein, putative, expressed
UniProt A0A194YMF4
Pfam PF08672 PF00888
Panther DB PTHR11932
NCBI CDD -
KEGG Orthology K03349; anaphase-promoting complex subunit 2
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT2G04660 : anaphase-promoting complex/cyclosome 2
RAP-DB (Rice) LOC_Os04g40830.1 : cullin family domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018375
Brachypodium PNT61322 , PNT61321 , KQJ83225
Barley HORVU2Hr1G083840.11 , HORVU2Hr1G083840.10 , HORVU2Hr1G083840.13 , HORVU2Hr1G083840.12 , HORVU0Hr1G004870.2 , HORVU0Hr1G004980.2 , HORVU0Hr1G004980.1 , HORVU0Hr1G004910.1 , HORVU0Hr1G004870.1 , HORVU2Hr1G083840.3 , HORVU2Hr1G083840.5 , HORVU2Hr1G083840.4 , HORVU2Hr1G083840.7 , HORVU2Hr1G083840.6 , HORVU2Hr1G083840.9 , HORVU2Hr1G083840.8
Wheat TraesCS2B02G361700 , TraesCS2D02G341700 , TraesCS2A02G321000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G179000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
3 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
4 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
5 Sobic.001G149100 vegetative storage protein, putative, expressed -
6 Sobic.008G031200 pentatricopeptide, putative, expressed -
7 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
8 Sobic.006G071628 - -
9 Sobic.010G250800 DNA binding protein, putative, expressed -
10 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
11 Sobic.005G088900 AGAP007117-PA, putative, expressed -
12 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
15 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
16 Sobic.001G051300 BEE 1, putative, expressed -
17 Sobic.007G006800 pentatricopeptide, putative, expressed -
18 Sobic.002G215200 lung seven transmembrane domain containing protein, putative, expressed -
19 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
20 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11


Gene co-expression network
sample Sobic010G252700 Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic009G052100 Sobic009G052100 Sobic010G252700--Sobic009G052100 Sobic002G362200 Sobic002G362200 Sobic010G252700--Sobic002G362200 Sobic001G149100 Sobic001G149100 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic006G071628 Sobic006G071628 Sobic010G252700--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic010G252700--Sobic010G250800 Sobic008G179000--Sobic010G252700 Sobic008G179000--Sobic008G031200 Sobic001G268300 Sobic001G268300 Sobic008G179000--Sobic001G268300 Sobic008G179000--Sobic002G362200 Sobic008G179000--Sobic007G123100 Sobic008G179000--Sobic001G149100 Sobic004G241000 Sobic004G241000 Sobic008G179000--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic008G179000--Sobic004G256900 Sobic008G009000 Sobic008G009000 Sobic008G179000--Sobic008G009000 Sobic007G123100--Sobic010G252700 Sobic007G123100--Sobic008G179000 Sobic007G123100--Sobic001G149100 Sobic007G123100--Sobic008G031200 Sobic006G069100 Sobic006G069100 Sobic007G123100--Sobic006G069100 Sobic007G123100--Sobic002G362200 Sobic005G088900 Sobic005G088900 Sobic007G123100--Sobic005G088900 Sobic007G123100--Sobic006G071628 Sobic007G123100--Sobic001G268300 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic009G052100--Sobic006G071628 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic002G362200--Sobic010G252700 Sobic002G362200--Sobic008G090000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic002G362200--Sobic001G268300 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic008G031200--Sobic008G179000 Sobic008G031200--Sobic001G268300 Sobic008G031200--Sobic010G252700 Sobic008G031200--Sobic002G362200 Sobic003G397100 Sobic003G397100 Sobic008G031200--Sobic003G397100 Sobic003G153900 Sobic003G153900 Sobic008G031200--Sobic003G153900 Sobic002G084400 Sobic002G084400 Sobic008G031200--Sobic002G084400 Sobic008G031200--Sobic001G537400 Sobic002G123600 Sobic002G123600 Sobic008G031200--Sobic002G123600 Sobic006G275500 Sobic006G275500 Sobic008G090000--Sobic006G275500 Sobic008G090000--Sobic003G147500 Sobic006G084300 Sobic006G084300 Sobic008G090000--Sobic006G084300 Sobic006G016700 Sobic006G016700 Sobic008G090000--Sobic006G016700 Sobic008G083500 Sobic008G083500 Sobic008G090000--Sobic008G083500 Sobic009G146250 Sobic009G146250 Sobic008G090000--Sobic009G146250 Sobic002G168000 Sobic002G168000 Sobic008G090000--Sobic002G168000 Sobic009G188900 Sobic009G188900 Sobic008G090000--Sobic009G188900 Sobic008G090000--Sobic002G362200 Sobic006G071628--Sobic009G052100 Sobic001G051300 Sobic001G051300 Sobic006G071628--Sobic001G051300 Sobic006G071628--Sobic006G084300 Sobic007G173000 Sobic007G173000 Sobic006G071628--Sobic007G173000 Sobic006G071628--Sobic010G250800 Sobic001G199500 Sobic001G199500 Sobic006G071628--Sobic001G199500 Sobic006G071628--Sobic004G156200 Sobic006G071628--Sobic001G507200 Sobic001G296800 Sobic001G296800 Sobic006G071628--Sobic001G296800 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic010G250800--Sobic005G088900 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100
Octagon: transcription factors


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