Gene annotation
Transcriptome id Sobic.007G006800.3,Sobic.007G006800.5,Sobic.007G006800.4
Synonym Sb07g000750
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YLI2
Pfam PF13041 PF14432 PF01535
Panther DB PTHR24015 PTHR24015:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33760 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g08140.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a040157
Brachypodium KQK09854 , KQK09857 , PNT72897 , PNT72896 , KQK09855 , KQK09856
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G250800 DNA binding protein, putative, expressed -
2 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
3 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.005G088900 AGAP007117-PA, putative, expressed -
5 Sobic.008G113300 expressed protein -
6 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
7 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
8 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
9 Sobic.002G215200 lung seven transmembrane domain containing protein, putative, expressed -
10 Sobic.005G163400 dnaJ domain containing protein, expressed -
11 Sobic.001G537400 MYB family transcription factor, putative, expressed -
12 Sobic.003G024000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide-N4-asparagine amidase A, putative, expressed -
13 Sobic.010G024500 expressed protein -
14 Sobic.008G083500 expressed protein -
15 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
16 Sobic.002G303800 expressed protein -
17 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
19 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
20 Sobic.002G168000 expressed protein -


Gene co-expression network
sample Sobic007G006800 Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic007G006800--Sobic010G250800 Sobic001G199500 Sobic001G199500 Sobic007G006800--Sobic001G199500 Sobic001G408300 Sobic001G408300 Sobic007G006800--Sobic001G408300 Sobic005G088900 Sobic005G088900 Sobic007G006800--Sobic005G088900 Sobic008G113300 Sobic008G113300 Sobic007G006800--Sobic008G113300 Sobic002G021200 Sobic002G021200 Sobic007G006800--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic007G006800--Sobic006G281900 Sobic003G369200 Sobic003G369200 Sobic007G006800--Sobic003G369200 Sobic002G215200 Sobic002G215200 Sobic007G006800--Sobic002G215200 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic001G199500--Sobic007G006800 Sobic001G199500--Sobic006G071628 Sobic003G144000 Sobic003G144000 Sobic001G199500--Sobic003G144000 Sobic001G408300--Sobic007G006800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic008G113300--Sobic007G006800 Sobic008G113300--Sobic006G281900 Sobic004G164700 Sobic004G164700 Sobic008G113300--Sobic004G164700 Sobic006G241800 Sobic006G241800 Sobic008G113300--Sobic006G241800 Sobic003G351900 Sobic003G351900 Sobic008G113300--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic008G113300--Sobic001G425700 Sobic005G163400 Sobic005G163400 Sobic008G113300--Sobic005G163400 Sobic003G153900 Sobic003G153900 Sobic008G113300--Sobic003G153900 Sobic009G177200 Sobic009G177200 Sobic008G113300--Sobic009G177200 Sobic007G187700 Sobic007G187700 Sobic002G021200--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic006G281900--Sobic002G168000 Sobic006G281900--Sobic002G021200 Sobic006G281900--Sobic009G188900 Sobic001G290500 Sobic001G290500 Sobic006G281900--Sobic001G290500 Sobic006G281900--Sobic001G199500 Sobic006G281900--Sobic001G425700 Sobic009G225500 Sobic009G225500 Sobic006G281900--Sobic009G225500 Sobic006G281900--Sobic007G187700 Sobic006G281900--Sobic003G024000 Sobic010G147700 Sobic010G147700 Sobic003G369200--Sobic010G147700 Sobic005G110535 Sobic005G110535 Sobic003G369200--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G183700 Sobic003G183700 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic007G168900 Sobic007G168900 Sobic003G369200--Sobic007G168900 Sobic003G289800 Sobic003G289800 Sobic002G215200--Sobic003G289800 Sobic002G215200--Sobic003G183700 Sobic006G051000 Sobic006G051000 Sobic002G215200--Sobic006G051000 Sobic002G215200--Sobic003G369200 Sobic002G215200--Sobic009G087000 Sobic004G243900 Sobic004G243900 Sobic002G215200--Sobic004G243900 Sobic002G215200--Sobic003G201000 Sobic006G195500 Sobic006G195500 Sobic002G215200--Sobic006G195500 Sobic003G318900 Sobic003G318900 Sobic002G215200--Sobic003G318900
Octagon: transcription factors


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