Gene annotation
Transcriptome id Sobic.005G088900.7,Sobic.005G088900.8,Sobic.005G088900.6,Sobic.005G088900.4,Sobic.005G088900.5
Synonym Sb05g007260
Functional annotation AGAP007117-PA, putative, expressed
UniProt A0A1B6PR39 , C5Y861
Pfam PF10155
Panther DB PTHR15975
NCBI CDD KOG4508; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18420 : -
RAP-DB (Rice) LOC_Os11g13694.1 : AGAP007117-PA, putative, expressed
MaizeGDB (Corn) Zm00025a029526 , Zm00025a015563
Brachypodium PNT63841 , PNT63843 , PNT63842 , PNT63844 , KQJ88840 , KQJ88841
Barley HORVU4Hr1G015530.1 , HORVU4Hr1G015530.2 , HORVU4Hr1G015530.3 , HORVU4Hr1G015530.5 , HORVU4Hr1G015530.6
Wheat TraesCS4D02G087600 , TraesCS4D02G087600 , TraesCS4D02G087600 , TraesCS4D02G087600 , TraesCS4A02G225800 , TraesCS4A02G225800 , TraesCS4A02G225800 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS4B02G090500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
2 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
3 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
5 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
6 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
7 Sobic.003G144000 pentatricopeptide, putative, expressed -
8 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
9 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
10 Sobic.007G006800 pentatricopeptide, putative, expressed -
11 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
12 Sobic.010G250800 DNA binding protein, putative, expressed -
13 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
14 Sobic.002G303800 expressed protein -
15 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
16 Sobic.005G079201 - -
17 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
18 Sobic.002G043000 HEN1, putative, expressed -
19 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5


Gene co-expression network
sample Sobic005G088900 Sobic005G088900 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic006G281900 Sobic006G281900 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic001G199500--Sobic003G144000 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic009G176300--Sobic005G088900 Sobic009G176300--Sobic008G068100 Sobic009G176300--Sobic009G191500 Sobic009G176300--Sobic003G432300 Sobic009G176300--Sobic003G336500 Sobic003G235700 Sobic003G235700 Sobic009G176300--Sobic003G235700 Sobic005G028100 Sobic005G028100 Sobic009G176300--Sobic005G028100 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400 Sobic004G215900--Sobic008G068100 Sobic006G236000 Sobic006G236000 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic008G111600 Sobic008G111600 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic002G043000 Sobic002G043000 Sobic004G215900--Sobic002G043000 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic008G068100--Sobic001G024000 Sobic002G126800 Sobic002G126800 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic002G132600 Sobic002G132600 Sobic003G432300--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic003G432300--Sobic001G373000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic003G432300--Sobic002G043000 Sobic003G432300--Sobic004G038100 Sobic003G144000--Sobic005G088900 Sobic003G144000--Sobic001G199500 Sobic010G038800 Sobic010G038800 Sobic003G144000--Sobic010G038800 Sobic003G144000--Sobic008G111600 Sobic003G144000--Sobic003G432300 Sobic005G098000 Sobic005G098000 Sobic003G144000--Sobic005G098000 Sobic004G082700 Sobic004G082700 Sobic003G144000--Sobic004G082700 Sobic006G181800 Sobic006G181800 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic002G303800 Sobic002G303800 Sobic002G133000--Sobic002G303800 Sobic007G043400 Sobic007G043400 Sobic002G133000--Sobic007G043400 Sobic002G133000--Sobic005G088900 Sobic004G330600 Sobic004G330600 Sobic002G133000--Sobic004G330600 Sobic004G208100 Sobic004G208100 Sobic002G133000--Sobic004G208100 Sobic006G120600 Sobic006G120600 Sobic002G133000--Sobic006G120600 Sobic001G371100 Sobic001G371100 Sobic002G133000--Sobic001G371100 Sobic010G021900 Sobic010G021900 Sobic002G133000--Sobic010G021900 Sobic004G047500 Sobic004G047500 Sobic002G133000--Sobic004G047500 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic002G003300--Sobic006G181800
Octagon: transcription factors


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