Gene annotation
Transcriptome id Sobic.003G144000.1,Sobic.003G144000.4,Sobic.003G144000.3,Sobic.003G144000.2
Synonym Sb03g012450
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XI57 , A0A1W0VXD2
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF386
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02370 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g19490.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a036107
Brachypodium KQK04073
Barley -
Wheat TraesCS2D02G553300
Populus -


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cDNA sequences
Sobic.003G144000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G088900 AGAP007117-PA, putative, expressed -
2 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
3 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
4 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
5 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
6 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
7 Sobic.004G082700 PPR repeat containing protein, expressed -
8 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
9 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
10 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
11 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
12 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
13 Sobic.002G043000 HEN1, putative, expressed -
14 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
15 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
16 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
17 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
18 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
19 Sobic.001G537400 MYB family transcription factor, putative, expressed -
20 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1


Gene co-expression network
sample Sobic003G144000 Sobic003G144000 Sobic005G088900 Sobic005G088900 Sobic003G144000--Sobic005G088900 Sobic001G199500 Sobic001G199500 Sobic003G144000--Sobic001G199500 Sobic010G038800 Sobic010G038800 Sobic003G144000--Sobic010G038800 Sobic008G111600 Sobic008G111600 Sobic003G144000--Sobic008G111600 Sobic003G432300 Sobic003G432300 Sobic003G144000--Sobic003G432300 Sobic005G098000 Sobic005G098000 Sobic003G144000--Sobic005G098000 Sobic004G082700 Sobic004G082700 Sobic003G144000--Sobic004G082700 Sobic006G181800 Sobic006G181800 Sobic003G144000--Sobic006G181800 Sobic001G200200 Sobic001G200200 Sobic003G144000--Sobic001G200200 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic006G281900 Sobic006G281900 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic001G199500--Sobic003G144000 Sobic010G038800--Sobic004G215900 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic001G372800 Sobic001G372800 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic002G426100 Sobic002G426100 Sobic008G111600--Sobic002G426100 Sobic008G111600--Sobic006G181800 Sobic002G362200 Sobic002G362200 Sobic008G111600--Sobic002G362200 Sobic008G111600--Sobic004G215900 Sobic002G043000 Sobic002G043000 Sobic008G111600--Sobic002G043000 Sobic001G024000 Sobic001G024000 Sobic008G111600--Sobic001G024000 Sobic002G078100 Sobic002G078100 Sobic008G111600--Sobic002G078100 Sobic008G111600--Sobic002G003300 Sobic008G111600--Sobic003G144000 Sobic002G126800 Sobic002G126800 Sobic003G432300--Sobic002G126800 Sobic005G028100 Sobic005G028100 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic002G132600 Sobic002G132600 Sobic003G432300--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic003G432300--Sobic001G373000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic003G432300--Sobic002G043000 Sobic004G038100 Sobic004G038100 Sobic003G432300--Sobic004G038100 Sobic010G161525 Sobic010G161525 Sobic005G098000--Sobic010G161525 Sobic005G098000--Sobic008G111600 Sobic005G098000--Sobic003G144000 Sobic006G206200 Sobic006G206200 Sobic005G098000--Sobic006G206200 Sobic003G412000 Sobic003G412000 Sobic005G098000--Sobic003G412000 Sobic005G098000--Sobic003G432300 Sobic003G130000 Sobic003G130000 Sobic005G098000--Sobic003G130000 Sobic005G098000--Sobic005G088900 Sobic005G098000--Sobic010G038800 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic004G082700--Sobic003G144000 Sobic001G371100 Sobic001G371100 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic006G181800--Sobic008G111600 Sobic006G181800--Sobic004G038100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic002G371600 Sobic002G371600 Sobic006G181800--Sobic002G371600 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000 Sobic004G356200 Sobic004G356200 Sobic001G200200--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic001G200200--Sobic005G031000 Sobic002G386900 Sobic002G386900 Sobic001G200200--Sobic002G386900 Sobic001G200200--Sobic002G371600 Sobic004G030400 Sobic004G030400 Sobic001G200200--Sobic004G030400 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic006G029100 Sobic006G029100 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800
Octagon: transcription factors


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