Gene annotation
Transcriptome id Sobic.001G200200.1,Sobic.001G200200.2
Synonym
Functional annotation tetratricopeptide repeat, putative, expressed
UniProt A0A1Z5S6V5 , A0A1Z5S721
Pfam PF01753 PF00856 PF13414 PF01753 PF13414
Panther DB PTHR12197 PTHR12197:SF173
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G33400 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g36250.1 : tetratricopeptide repeat, putative, expressed
MaizeGDB (Corn) Zm00025a006387
Brachypodium -
Barley HORVU1Hr1G046620.10
Wheat -
Populus -


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cDNA sequences
Sobic.001G200200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356200 expressed protein -
2 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
3 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
5 Sobic.004G030400 expressed protein -
6 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
7 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
8 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
9 Sobic.002G125800 phosphoglucomutase, putative, expressed -
10 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
11 Sobic.003G144000 pentatricopeptide, putative, expressed -
12 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
13 Sobic.005G168000 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
15 Sobic.002G112600 zinc finger family protein, putative, expressed -
16 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
17 Sobic.002G239601 - -
18 Sobic.008G123300 AAA-type ATPase family protein, putative, expressed -
19 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
20 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic001G200200 Sobic001G200200 Sobic004G356200 Sobic004G356200 Sobic001G200200--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic001G200200--Sobic005G031000 Sobic002G386900 Sobic002G386900 Sobic001G200200--Sobic002G386900 Sobic002G371600 Sobic002G371600 Sobic001G200200--Sobic002G371600 Sobic004G030400 Sobic004G030400 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic006G029100 Sobic006G029100 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic005G031000--Sobic004G356200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic010G155600 Sobic010G155600 Sobic005G031000--Sobic010G155600 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic001G123600 Sobic001G123600 Sobic002G386900--Sobic001G123600 Sobic002G386900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic004G030400--Sobic002G160700 Sobic004G030400--Sobic004G356200 Sobic004G030400--Sobic001G200200 Sobic002G199400 Sobic002G199400 Sobic004G030400--Sobic002G199400 Sobic004G030400--Sobic001G123600 Sobic002G142700 Sobic002G142700 Sobic004G030400--Sobic002G142700 Sobic002G208400 Sobic002G208400 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic004G030400--Sobic002G386600 Sobic008G111600 Sobic008G111600 Sobic006G181800--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic006G181800--Sobic004G038100 Sobic002G426100 Sobic002G426100 Sobic006G181800--Sobic002G426100 Sobic006G033101 Sobic006G033101 Sobic006G181800--Sobic006G033101 Sobic006G181800--Sobic002G371600 Sobic002G043000 Sobic002G043000 Sobic006G181800--Sobic002G043000 Sobic008G092800 Sobic008G092800 Sobic006G181800--Sobic008G092800 Sobic006G236000 Sobic006G236000 Sobic006G181800--Sobic006G236000 Sobic010G188000 Sobic010G188000 Sobic006G181800--Sobic010G188000 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic006G191200--Sobic004G097900 Sobic006G029100--Sobic002G371600 Sobic006G029100--Sobic002G160700 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic003G256800 Sobic003G256800 Sobic006G029100--Sobic003G256800 Sobic006G029100--Sobic003G308500 Sobic006G029100--Sobic001G373800 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic002G125800--Sobic005G031000 Sobic002G125800--Sobic006G237000 Sobic002G125800--Sobic001G533100 Sobic002G125800--Sobic001G200200 Sobic001G004200 Sobic001G004200 Sobic002G125800--Sobic001G004200 Sobic002G125800--Sobic004G356200 Sobic010G192600 Sobic010G192600 Sobic002G125800--Sobic010G192600 Sobic003G166500 Sobic003G166500 Sobic002G125800--Sobic003G166500 Sobic002G125800--Sobic004G030400
Octagon: transcription factors


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