Gene annotation
Transcriptome id Sobic.002G386900.13,Sobic.002G386900.14,Sobic.002G386900.7,Sobic.002G386900.8,Sobic.002G386900.9,Sobic.002G386900.10,Sobic.002G386900.12,Sobic.002G386900.11
Synonym Sb02g040320
Functional annotation pseudouridylate synthase, putative, expressed
UniProt C5X383 , A0A1B6QFS8
Pfam PF01142
Panther DB PTHR13326 PTHR13326:SF8
NCBI CDD KOG2339; Uncharacterized conserved protein
KEGG Orthology K06176; truD, tRNA pseudouridine13 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT3G04820 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os01g56620.1 : pseudouridylate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a048866
Brachypodium KQK05495 , KQK09991 , KQK09992 , KQK09993 , PNT70946 , PNT70945 , PNT72955 , PNT72954 , PNT72953 , PNT72952
Barley HORVU1Hr1G078030.11 , HORVU1Hr1G078030.10 , HORVU1Hr1G078030.12 , HORVU3Hr1G075620.9 , HORVU3Hr1G075620.8 , HORVU3Hr1G075620.1 , HORVU3Hr1G075620.3 , HORVU3Hr1G075620.2 , HORVU3Hr1G075620.5 , HORVU3Hr1G075620.4 , HORVU3Hr1G075620.7 , HORVU3Hr1G075620.6 , HORVU1Hr1G078030.1 , HORVU1Hr1G078030.3 , HORVU1Hr1G078030.2 , HORVU1Hr1G078030.5 , HORVU1Hr1G078030.4 , HORVU1Hr1G078030.7 , HORVU1Hr1G078030.6 , HORVU1Hr1G078030.9 , HORVU1Hr1G078030.8 , HORVU3Hr1G075620.60 , HORVU3Hr1G075620.59 , HORVU3Hr1G075620.58 , HORVU3Hr1G075620.51 , HORVU3Hr1G075620.50 , HORVU3Hr1G075620.53 , HORVU3Hr1G075620.52 , HORVU3Hr1G075620.55 , HORVU3Hr1G075620.54 , HORVU3Hr1G075620.57 , HORVU3Hr1G075620.56 , HORVU3Hr1G075620.48 , HORVU3Hr1G075620.49 , HORVU3Hr1G075620.46 , HORVU3Hr1G075620.47 , HORVU3Hr1G075620.44 , HORVU3Hr1G075620.45 , HORVU3Hr1G075620.42 , HORVU3Hr1G075620.43 , HORVU3Hr1G075620.40 , HORVU3Hr1G075620.41 , HORVU3Hr1G075620.39 , HORVU3Hr1G075620.38 , HORVU3Hr1G075620.32 , HORVU3Hr1G075620.31 , HORVU3Hr1G075620.30 , HORVU3Hr1G075620.37 , HORVU3Hr1G075620.36 , HORVU3Hr1G075620.35 , HORVU3Hr1G075620.34 , HORVU3Hr1G075620.28 , HORVU3Hr1G075620.29 , HORVU3Hr1G075620.20 , HORVU3Hr1G075620.21 , HORVU3Hr1G075620.22 , HORVU3Hr1G075620.23 , HORVU3Hr1G075620.24 , HORVU3Hr1G075620.25 , HORVU3Hr1G075620.26 , HORVU3Hr1G075620.27 , HORVU1Hr1G078030.32 , HORVU1Hr1G078030.31 , HORVU1Hr1G078030.37 , HORVU1Hr1G078030.36 , HORVU1Hr1G078030.35 , HORVU1Hr1G078030.34 , HORVU1Hr1G078030.39 , HORVU1Hr1G078030.38 , HORVU1Hr1G078030.46 , HORVU1Hr1G078030.47 , HORVU1Hr1G078030.42 , HORVU1Hr1G078030.43 , HORVU1Hr1G078030.40 , HORVU1Hr1G078030.41 , HORVU1Hr1G078030.48 , HORVU3Hr1G075620.19 , HORVU3Hr1G075620.18 , HORVU3Hr1G075620.15 , HORVU3Hr1G075620.14 , HORVU3Hr1G075620.17 , HORVU3Hr1G075620.16 , HORVU3Hr1G075620.11 , HORVU3Hr1G075620.10 , HORVU3Hr1G075620.13 , HORVU3Hr1G075620.12 , HORVU1Hr1G078030.25 , HORVU1Hr1G078030.26
Wheat TraesCS1A02G327000 , TraesCS1D02G329100 , TraesCS3A02G322500 , TraesCS1B02G340400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
2 Sobic.004G097900 expressed protein -
3 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
4 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
5 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
6 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
7 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
8 Sobic.002G239601 - -
9 Sobic.002G292800 MORN repeat domain containing protein, expressed -
10 Sobic.009G160500 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
11 Sobic.001G495400 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G113300 expressed protein -
13 Sobic.002G343200 homeodomain-like, putative, expressed -
14 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
15 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
16 Sobic.004G141800 expressed protein -
17 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
18 Sobic.009G120400 methyltransferase, putative, expressed -
19 Sobic.006G170900 growth regulator related protein, putative, expressed -
20 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8


Gene co-expression network
sample Sobic002G386900 Sobic002G386900 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic001G123600 Sobic001G123600 Sobic002G386900--Sobic001G123600 Sobic006G191200 Sobic006G191200 Sobic002G386900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic006G265600 Sobic006G265600 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G160700 Sobic002G160700 Sobic002G386600--Sobic002G160700 Sobic001G085800 Sobic001G085800 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic004G097900--Sobic002G292800 Sobic004G097900--Sobic002G386900 Sobic004G097900--Sobic006G191200 Sobic001G495400 Sobic001G495400 Sobic004G097900--Sobic001G495400 Sobic004G097900--Sobic006G029100 Sobic002G112600 Sobic002G112600 Sobic004G097900--Sobic002G112600 Sobic003G218200 Sobic003G218200 Sobic004G097900--Sobic003G218200 Sobic006G170900 Sobic006G170900 Sobic004G097900--Sobic006G170900 Sobic004G106250 Sobic004G106250 Sobic004G097900--Sobic004G106250 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic009G120400 Sobic009G120400 Sobic001G123600--Sobic009G120400 Sobic003G299500 Sobic003G299500 Sobic001G123600--Sobic003G299500 Sobic003G010900 Sobic003G010900 Sobic001G123600--Sobic003G010900 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic002G066800 Sobic002G066800 Sobic006G191200--Sobic002G066800 Sobic006G191200--Sobic003G299500 Sobic006G191200--Sobic002G386900 Sobic006G191200--Sobic009G120400 Sobic006G191200--Sobic004G097900 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic007G034200--Sobic006G170900 Sobic001G051400--Sobic002G066800 Sobic001G051400--Sobic007G034200 Sobic003G393200 Sobic003G393200 Sobic001G051400--Sobic003G393200 Sobic001G051400--Sobic003G010900 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic005G087300 Sobic005G087300 Sobic001G051400--Sobic005G087300 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic004G356200 Sobic004G356200 Sobic001G200200--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic001G200200--Sobic005G031000 Sobic001G200200--Sobic002G386900 Sobic002G371600 Sobic002G371600 Sobic001G200200--Sobic002G371600 Sobic004G030400 Sobic004G030400 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic001G200200--Sobic006G191200 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic002G239601--Sobic002G386900 Sobic002G239601--Sobic001G123600 Sobic002G239601--Sobic002G386600 Sobic002G239601--Sobic004G356200 Sobic002G239601--Sobic007G034200 Sobic008G123300 Sobic008G123300 Sobic002G239601--Sobic008G123300 Sobic002G239601--Sobic003G360300 Sobic002G239601--Sobic003G299500 Sobic002G239601--Sobic001G200200 Sobic002G292800--Sobic004G097900 Sobic006G245900 Sobic006G245900 Sobic002G292800--Sobic006G245900 Sobic002G079100 Sobic002G079100 Sobic002G292800--Sobic002G079100 Sobic002G292800--Sobic002G386900 Sobic002G292800--Sobic006G191200 Sobic002G063900 Sobic002G063900 Sobic002G292800--Sobic002G063900 Sobic003G124600 Sobic003G124600 Sobic002G292800--Sobic003G124600 Sobic002G292800--Sobic006G170900 Sobic002G292800--Sobic001G495400
Octagon: transcription factors


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