Gene annotation
Transcriptome id Sobic.007G034200.1,Sobic.007G034200.2
Synonym CHR35, DRD1, Sb07g002945, DMS1
Functional annotation expressed protein
UniProt A0A1B6PFB3
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF611
NCBI CDD -
KEGG Orthology K10875; RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G16390 : SNF2 domain-containing protein / helicase domain-containing protein
RAP-DB (Rice) LOC_Os06g14440.1 : DRD1, putative, expressed
MaizeGDB (Corn) Zm00025a030157 , Zm00025a055258
Brachypodium KQJ95950 , KQJ95949 , KQK05653
Barley HORVU2Hr1G034330.11 , HORVU2Hr1G034330.10 , HORVU2Hr1G034330.1 , HORVU2Hr1G034330.3 , HORVU2Hr1G034330.2 , HORVU2Hr1G034330.5 , HORVU2Hr1G034330.4 , HORVU2Hr1G034330.7 , HORVU2Hr1G034330.6 , HORVU2Hr1G034330.9 , HORVU2Hr1G034330.8
Wheat TraesCS5A02G340400 , TraesCS2A02G182200 , TraesCS2A02G182200 , TraesCS2D02G189900 , TraesCS2B02G208700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G299500 expressed protein -
2 Sobic.009G120400 methyltransferase, putative, expressed -
3 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
4 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
5 Sobic.003G194800 EF hand family protein, putative, expressed -
6 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
7 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
8 Sobic.003G113300 expressed protein -
9 Sobic.006G170900 growth regulator related protein, putative, expressed -
10 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
11 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
12 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
13 Sobic.003G285700 ATP binding protein, putative, expressed -
14 Sobic.010G227000 pentatricopeptide, putative, expressed -
15 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
16 Sobic.010G038900 expressed protein -
17 Sobic.002G173400 expressed protein -
18 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
19 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.009G054400 ECT protein, putative, expressed -


Gene co-expression network
sample Sobic007G034200 Sobic007G034200 Sobic003G299500 Sobic003G299500 Sobic007G034200--Sobic003G299500 Sobic009G120400 Sobic009G120400 Sobic007G034200--Sobic009G120400 Sobic001G051400 Sobic001G051400 Sobic007G034200--Sobic001G051400 Sobic001G123600 Sobic001G123600 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic002G386900 Sobic002G386900 Sobic007G034200--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic003G299500--Sobic004G106250 Sobic003G299500--Sobic009G120400 Sobic003G016500 Sobic003G016500 Sobic003G299500--Sobic003G016500 Sobic003G299500--Sobic001G123600 Sobic006G245900 Sobic006G245900 Sobic003G299500--Sobic006G245900 Sobic002G235900 Sobic002G235900 Sobic003G299500--Sobic002G235900 Sobic003G299500--Sobic006G191200 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic009G120400--Sobic001G051400 Sobic002G066800 Sobic002G066800 Sobic001G051400--Sobic002G066800 Sobic001G051400--Sobic007G034200 Sobic003G393200 Sobic003G393200 Sobic001G051400--Sobic003G393200 Sobic003G010900 Sobic003G010900 Sobic001G051400--Sobic003G010900 Sobic001G051400--Sobic009G120400 Sobic001G051400--Sobic006G191200 Sobic005G087300 Sobic005G087300 Sobic001G051400--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic001G123600--Sobic006G191200 Sobic001G229300 Sobic001G229300 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic001G123600--Sobic009G120400 Sobic001G123600--Sobic003G299500 Sobic001G123600--Sobic003G010900 Sobic008G085950 Sobic008G085950 Sobic003G194800--Sobic008G085950 Sobic008G047500 Sobic008G047500 Sobic003G194800--Sobic008G047500 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic003G194800--Sobic002G173400 Sobic003G194800--Sobic003G299500 Sobic003G194800--Sobic007G105700 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic002G386900--Sobic001G123600 Sobic002G386900--Sobic006G191200 Sobic002G386900--Sobic007G034200 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic006G191200--Sobic003G299500 Sobic006G191200--Sobic002G386900 Sobic006G191200--Sobic009G120400 Sobic006G191200--Sobic004G097900 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic005G114500 Sobic005G114500 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G113300--Sobic003G393200 Sobic003G113300--Sobic001G051400 Sobic006G170900--Sobic005G123400 Sobic003G124600 Sobic003G124600 Sobic006G170900--Sobic003G124600 Sobic006G170900--Sobic003G113300 Sobic006G170900--Sobic007G034200 Sobic006G103700 Sobic006G103700 Sobic006G170900--Sobic006G103700 Sobic006G170900--Sobic002G292800 Sobic006G170900--Sobic003G194800 Sobic006G170900--Sobic004G106250 Sobic006G237500 Sobic006G237500 Sobic006G170900--Sobic006G237500
Octagon: transcription factors


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