Gene annotation
Transcriptome id Sobic.003G285700.2,Sobic.003G285700.1
Synonym Sb03g033660
Functional annotation ATP binding protein, putative, expressed
UniProt A0A1B6Q5W0 , A0A1W0VZC2
Pfam PF12169 PF13177
Panther DB PTHR11669 PTHR11669:SF16
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology -
Gene Ontology GO:0003887; DNA-directed DNA polymerase activity


Orthologs (automatic annotation)
TAIR AT4G18820 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os01g53070.1 : ATP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a044270 , Zm00025a039018 , Zm00025a027707
Brachypodium KQK09590 , KQK05257 , KQK05256 , KQK05255 , PNT70845 , PNT70846
Barley HORVU1Hr1G081530.4 , HORVU1Hr1G081530.5 , HORVU1Hr1G081530.6 , HORVU1Hr1G081530.1 , HORVU1Hr1G081530.2 , HORVU1Hr1G081530.3
Wheat TraesCS3A02G281700 , TraesCS3B02G315400 , TraesCS3B02G315400 , TraesCS3B02G315400 , TraesCS1A02G348900 , TraesCS1A02G348900 , TraesCS1B02G364000 , TraesCS1B02G364000 , TraesCS1D02G352300 , TraesCS3D02G281700 , TraesCS3D02G281700 , TraesCS1D02G352300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
2 Sobic.001G433600 - -
3 Sobic.002G390800 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
4 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
5 Sobic.009G054400 ECT protein, putative, expressed -
6 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
7 Sobic.002G392400 expressed protein -
8 Sobic.009G120400 methyltransferase, putative, expressed -
9 Sobic.002G192900 expressed protein -
10 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
11 Sobic.004G353300 growth regulator related protein, putative, expressed -
12 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
13 Sobic.007G043700 oxysterol-binding protein-related protein 6, putative, expressed -
14 Sobic.003G216600 BAH domain containing protein, expressed -
15 Sobic.002G322700 expressed protein -
16 Sobic.009G024900 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
17 Sobic.004G306100 expressed protein -
18 Sobic.005G060100 growth regulator related protein, putative, expressed -
19 Sobic.007G118050 - -
20 Sobic.003G200000 respiratory burst oxidase, putative, expressed -


Gene co-expression network
sample Sobic003G285700 Sobic003G285700 Sobic002G241100 Sobic002G241100 Sobic003G285700--Sobic002G241100 Sobic001G433600 Sobic001G433600 Sobic003G285700--Sobic001G433600 Sobic002G390800 Sobic002G390800 Sobic003G285700--Sobic002G390800 Sobic002G308000 Sobic002G308000 Sobic003G285700--Sobic002G308000 Sobic009G054400 Sobic009G054400 Sobic003G285700--Sobic009G054400 Sobic007G105700 Sobic007G105700 Sobic003G285700--Sobic007G105700 Sobic002G392400 Sobic002G392400 Sobic003G285700--Sobic002G392400 Sobic009G120400 Sobic009G120400 Sobic003G285700--Sobic009G120400 Sobic002G192900 Sobic002G192900 Sobic003G285700--Sobic002G192900 Sobic001G131900 Sobic001G131900 Sobic002G241100--Sobic001G131900 Sobic002G241100--Sobic001G433600 Sobic002G241100--Sobic002G392400 Sobic002G241100--Sobic002G308000 Sobic007G189100 Sobic007G189100 Sobic002G241100--Sobic007G189100 Sobic001G117900 Sobic001G117900 Sobic002G241100--Sobic001G117900 Sobic002G241100--Sobic003G285700 Sobic002G241100--Sobic009G054400 Sobic002G241100--Sobic007G105700 Sobic001G433600--Sobic001G117900 Sobic001G433600--Sobic002G308000 Sobic005G060100 Sobic005G060100 Sobic001G433600--Sobic005G060100 Sobic001G433600--Sobic007G105700 Sobic001G433600--Sobic009G054400 Sobic004G298600 Sobic004G298600 Sobic001G433600--Sobic004G298600 Sobic001G433600--Sobic007G189100 Sobic001G433600--Sobic001G131900 Sobic007G086600 Sobic007G086600 Sobic001G433600--Sobic007G086600 Sobic001G082800 Sobic001G082800 Sobic002G390800--Sobic001G082800 Sobic007G102000 Sobic007G102000 Sobic002G390800--Sobic007G102000 Sobic009G125800 Sobic009G125800 Sobic002G390800--Sobic009G125800 Sobic008G047500 Sobic008G047500 Sobic002G390800--Sobic008G047500 Sobic002G390800--Sobic002G192900 Sobic009G136000 Sobic009G136000 Sobic002G390800--Sobic009G136000 Sobic008G004900 Sobic008G004900 Sobic002G390800--Sobic008G004900 Sobic001G248400 Sobic001G248400 Sobic002G390800--Sobic001G248400 Sobic010G038200 Sobic010G038200 Sobic002G390800--Sobic010G038200 Sobic002G308000--Sobic002G392400 Sobic002G308000--Sobic007G105700 Sobic002G308000--Sobic001G117900 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic010G253200 Sobic010G253200 Sobic002G308000--Sobic010G253200 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G308000--Sobic002G192900 Sobic009G054400--Sobic001G433600 Sobic010G009700 Sobic010G009700 Sobic009G054400--Sobic010G009700 Sobic009G054400--Sobic007G105700 Sobic009G054400--Sobic002G392400 Sobic009G054400--Sobic002G241100 Sobic002G239400 Sobic002G239400 Sobic009G054400--Sobic002G239400 Sobic009G054400--Sobic005G060100 Sobic009G054400--Sobic008G047500 Sobic003G200000 Sobic003G200000 Sobic009G054400--Sobic003G200000 Sobic007G105700--Sobic002G392400 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic007G105700--Sobic001G433600 Sobic001G385300 Sobic001G385300 Sobic007G105700--Sobic001G385300 Sobic001G308500 Sobic001G308500 Sobic007G105700--Sobic001G308500 Sobic007G105700--Sobic004G298600 Sobic008G085950 Sobic008G085950 Sobic007G105700--Sobic008G085950 Sobic007G105700--Sobic001G117900 Sobic002G392400--Sobic007G105700 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G348400 Sobic002G348400 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic002G392400--Sobic003G293400 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic010G153400 Sobic010G153400 Sobic002G392400--Sobic010G153400 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic007G034200 Sobic007G034200 Sobic009G120400--Sobic007G034200 Sobic003G194800 Sobic003G194800 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic009G120400--Sobic007G105700 Sobic003G299500 Sobic003G299500 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic002G192900--Sobic002G308000 Sobic010G188900 Sobic010G188900 Sobic002G192900--Sobic010G188900 Sobic006G095000 Sobic006G095000 Sobic002G192900--Sobic006G095000 Sobic001G361200 Sobic001G361200 Sobic002G192900--Sobic001G361200 Sobic002G192900--Sobic002G390800 Sobic003G184300 Sobic003G184300 Sobic002G192900--Sobic003G184300 Sobic004G064600 Sobic004G064600 Sobic002G192900--Sobic004G064600 Sobic001G323400 Sobic001G323400 Sobic002G192900--Sobic001G323400 Sobic002G192900--Sobic001G248400
Octagon: transcription factors


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