Gene annotation
Transcriptome id Sobic.001G051400.2,Sobic.001G051400.1
Synonym Sb01g004720
Functional annotation aminoacyl-tRNA synthetase, putative, expressed
UniProt A0A1Z5S4W7 , A0A1B6QHD9
Pfam PF02791
Panther DB PTHR14296
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G18950 : DDT domain superfamily
RAP-DB (Rice) LOC_Os07g09580.1 : aminoacyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a008607 , Zm00025a049320 , Zm00025a045301 , Zm00025a016029
Brachypodium KQK20457 , KQK12638
Barley HORVU2Hr1G051810.8 , HORVU2Hr1G051810.1 , HORVU2Hr1G051810.3 , HORVU2Hr1G051810.2 , HORVU2Hr1G051810.5 , HORVU2Hr1G051810.6 , HORVU5Hr1G107440.20 , HORVU5Hr1G107440.21 , HORVU5Hr1G107440.11 , HORVU5Hr1G107440.10 , HORVU5Hr1G107440.13 , HORVU5Hr1G107440.12 , HORVU5Hr1G107440.15 , HORVU5Hr1G107440.14 , HORVU5Hr1G107440.17 , HORVU5Hr1G107440.16 , HORVU5Hr1G107440.19 , HORVU5Hr1G107440.18 , HORVU5Hr1G107440.5 , HORVU5Hr1G107440.4 , HORVU5Hr1G107440.7 , HORVU5Hr1G107440.6 , HORVU5Hr1G107440.1 , HORVU5Hr1G107440.3 , HORVU5Hr1G107440.2 , HORVU5Hr1G107440.9 , HORVU5Hr1G107440.8
Wheat TraesCS2D02G237700 , TraesCS2D02G237700 , TraesCS5D02G456200 , TraesCS5A02G449600
Populus -


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cDNA sequences
Sobic.001G051400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
2 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
3 Sobic.003G393200 expressed protein -
4 Sobic.003G010900 expressed protein -
5 Sobic.009G120400 methyltransferase, putative, expressed -
6 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
7 Sobic.005G087300 protein kinase family protein, putative, expressed -
8 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
9 Sobic.005G123400 expressed protein -
10 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
11 Sobic.007G153500 metal cation transporter, putative, expressed K14713: SLC39A7, KE4, solute carrier family 39 (zinc transporter), member 7
12 Sobic.002G392400 expressed protein -
13 Sobic.003G113300 expressed protein -
14 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
15 Sobic.003G194800 EF hand family protein, putative, expressed -
16 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
17 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
18 Sobic.003G297700 lipid-A-disaccharide synthase family protein, expressed K00748: lipid-A-disaccharide synthase
19 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.001G229300 expressed protein -


Gene co-expression network
sample Sobic001G051400 Sobic001G051400 Sobic002G066800 Sobic002G066800 Sobic001G051400--Sobic002G066800 Sobic007G034200 Sobic007G034200 Sobic001G051400--Sobic007G034200 Sobic003G393200 Sobic003G393200 Sobic001G051400--Sobic003G393200 Sobic003G010900 Sobic003G010900 Sobic001G051400--Sobic003G010900 Sobic009G120400 Sobic009G120400 Sobic001G051400--Sobic009G120400 Sobic006G191200 Sobic006G191200 Sobic001G051400--Sobic006G191200 Sobic005G087300 Sobic005G087300 Sobic001G051400--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic001G051400--Sobic002G078100 Sobic005G123400 Sobic005G123400 Sobic001G051400--Sobic005G123400 Sobic002G066800--Sobic001G051400 Sobic002G066800--Sobic005G087300 Sobic002G066800--Sobic002G078100 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic002G066800--Sobic003G010900 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic003G299500 Sobic003G299500 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic007G034200--Sobic001G051400 Sobic001G123600 Sobic001G123600 Sobic007G034200--Sobic001G123600 Sobic003G194800 Sobic003G194800 Sobic007G034200--Sobic003G194800 Sobic002G386900 Sobic002G386900 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900 Sobic003G190200 Sobic003G190200 Sobic003G393200--Sobic003G190200 Sobic003G393200--Sobic005G123400 Sobic003G393200--Sobic001G051400 Sobic006G237500 Sobic006G237500 Sobic003G393200--Sobic006G237500 Sobic003G393200--Sobic002G066800 Sobic003G393200--Sobic005G087300 Sobic001G043200 Sobic001G043200 Sobic003G393200--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G393200--Sobic001G343000 Sobic009G059400 Sobic009G059400 Sobic003G393200--Sobic009G059400 Sobic003G010900--Sobic001G051400 Sobic004G145600 Sobic004G145600 Sobic003G010900--Sobic004G145600 Sobic003G010900--Sobic002G066800 Sobic007G016900 Sobic007G016900 Sobic003G010900--Sobic007G016900 Sobic003G010900--Sobic001G123600 Sobic004G084400 Sobic004G084400 Sobic003G010900--Sobic004G084400 Sobic001G229300 Sobic001G229300 Sobic003G010900--Sobic001G229300 Sobic003G432800 Sobic003G432800 Sobic003G010900--Sobic003G432800 Sobic002G381900 Sobic002G381900 Sobic003G010900--Sobic002G381900 Sobic002G173400 Sobic002G173400 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic009G120400--Sobic001G051400 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic006G191200--Sobic003G299500 Sobic006G191200--Sobic002G386900 Sobic006G191200--Sobic009G120400 Sobic004G097900 Sobic004G097900 Sobic006G191200--Sobic004G097900 Sobic009G040250 Sobic009G040250 Sobic005G087300--Sobic009G040250 Sobic002G313100 Sobic002G313100 Sobic005G087300--Sobic002G313100 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic005G087300--Sobic003G393200 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic010G160300 Sobic010G160300 Sobic005G087300--Sobic010G160300 Sobic002G078100--Sobic002G066800 Sobic002G078100--Sobic002G426100 Sobic002G078100--Sobic009G120400 Sobic008G047500 Sobic008G047500 Sobic002G078100--Sobic008G047500 Sobic002G078100--Sobic006G191200 Sobic002G078100--Sobic001G051400 Sobic008G111600 Sobic008G111600 Sobic002G078100--Sobic008G111600 Sobic002G078100--Sobic003G194800 Sobic002G078100--Sobic007G034200 Sobic005G123400--Sobic006G237500 Sobic010G112600 Sobic010G112600 Sobic005G123400--Sobic010G112600 Sobic005G123400--Sobic003G393200 Sobic005G123400--Sobic001G043200 Sobic009G227100 Sobic009G227100 Sobic005G123400--Sobic009G227100 Sobic009G252300 Sobic009G252300 Sobic005G123400--Sobic009G252300 Sobic007G030100 Sobic007G030100 Sobic005G123400--Sobic007G030100 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400
Octagon: transcription factors


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