Gene annotation
Transcriptome id Sobic.003G297700.4,Sobic.003G297700.3,Sobic.003G297700.1
Synonym Sb03g034785
Functional annotation lipid-A-disaccharide synthase family protein, expressed
UniProt A0A1W0VZJ8 , A0A1B6Q637
Pfam PF02684
Panther DB PTHR30372 PTHR30372:SF3
NCBI CDD -
KEGG Orthology K00748; lipid-A-disaccharide synthase
Gene Ontology GO:0009245; lipid A biosynthetic process GO:0008915lipid-A-disaccharide synthase activity


Orthologs (automatic annotation)
TAIR AT2G04560 : transferases, transferring glycosyl groups
RAP-DB (Rice) LOC_Os01g54900.1 : lipid-A-disaccharide synthase family protein, expressed
MaizeGDB (Corn) Zm00025a027620
Brachypodium KQK09757
Barley -
Wheat TraesCS3A02G291500 , TraesCS3A02G291500 , TraesCS3B02G326100 , TraesCS3B02G326100 , TraesCS3D02G291200 , TraesCS3D02G291200 , TraesCS3D02G291200
Populus -


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cDNA sequences
Sobic.003G297700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G198400 phosphoenolpyruvate carboxykinase, putative, expressed -
2 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
3 Sobic.002G343200 homeodomain-like, putative, expressed -
4 Sobic.003G393200 expressed protein -
5 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
6 Sobic.005G087300 protein kinase family protein, putative, expressed -
7 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
8 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
9 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
10 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
11 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
12 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
13 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
14 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
15 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
17 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
18 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
19 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
20 Sobic.003G190200 Sec1 family transport protein, putative, expressed -


Gene co-expression network
sample Sobic003G297700 Sobic003G297700 Sobic006G198400 Sobic006G198400 Sobic003G297700--Sobic006G198400 Sobic003G021600 Sobic003G021600 Sobic003G297700--Sobic003G021600 Sobic002G343200 Sobic002G343200 Sobic003G297700--Sobic002G343200 Sobic003G393200 Sobic003G393200 Sobic003G297700--Sobic003G393200 Sobic001G051400 Sobic001G051400 Sobic003G297700--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic003G297700--Sobic005G087300 Sobic002G066800 Sobic002G066800 Sobic003G297700--Sobic002G066800 Sobic010G086300 Sobic010G086300 Sobic003G297700--Sobic010G086300 Sobic006G237500 Sobic006G237500 Sobic003G297700--Sobic006G237500 Sobic006G198400--Sobic003G297700 Sobic006G198400--Sobic003G021600 Sobic001G497600 Sobic001G497600 Sobic006G198400--Sobic001G497600 Sobic006G198400--Sobic005G087300 Sobic006G198400--Sobic003G393200 Sobic009G194000 Sobic009G194000 Sobic006G198400--Sobic009G194000 Sobic009G040250 Sobic009G040250 Sobic006G198400--Sobic009G040250 Sobic002G147200 Sobic002G147200 Sobic006G198400--Sobic002G147200 Sobic007G153500 Sobic007G153500 Sobic006G198400--Sobic007G153500 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic002G343200--Sobic003G297700 Sobic007G016900 Sobic007G016900 Sobic002G343200--Sobic007G016900 Sobic006G282200 Sobic006G282200 Sobic002G343200--Sobic006G282200 Sobic002G386900 Sobic002G386900 Sobic002G343200--Sobic002G386900 Sobic003G304400 Sobic003G304400 Sobic002G343200--Sobic003G304400 Sobic003G052800 Sobic003G052800 Sobic002G343200--Sobic003G052800 Sobic002G343200--Sobic001G051400 Sobic005G133800 Sobic005G133800 Sobic002G343200--Sobic005G133800 Sobic002G220200 Sobic002G220200 Sobic002G343200--Sobic002G220200 Sobic003G393200--Sobic003G190200 Sobic005G123400 Sobic005G123400 Sobic003G393200--Sobic005G123400 Sobic003G393200--Sobic001G051400 Sobic003G393200--Sobic006G237500 Sobic003G393200--Sobic002G066800 Sobic003G393200--Sobic005G087300 Sobic003G393200--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G393200--Sobic001G343000 Sobic009G059400 Sobic009G059400 Sobic003G393200--Sobic009G059400 Sobic001G051400--Sobic002G066800 Sobic007G034200 Sobic007G034200 Sobic001G051400--Sobic007G034200 Sobic001G051400--Sobic003G393200 Sobic003G010900 Sobic003G010900 Sobic001G051400--Sobic003G010900 Sobic009G120400 Sobic009G120400 Sobic001G051400--Sobic009G120400 Sobic006G191200 Sobic006G191200 Sobic001G051400--Sobic006G191200 Sobic001G051400--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic001G051400--Sobic002G078100 Sobic001G051400--Sobic005G123400 Sobic005G087300--Sobic009G040250 Sobic002G313100 Sobic002G313100 Sobic005G087300--Sobic002G313100 Sobic005G087300--Sobic002G066800 Sobic004G198300 Sobic004G198300 Sobic005G087300--Sobic004G198300 Sobic007G086600 Sobic007G086600 Sobic005G087300--Sobic007G086600 Sobic005G087300--Sobic003G393200 Sobic007G105700 Sobic007G105700 Sobic005G087300--Sobic007G105700 Sobic002G322400 Sobic002G322400 Sobic005G087300--Sobic002G322400 Sobic010G160300 Sobic010G160300 Sobic005G087300--Sobic010G160300 Sobic002G066800--Sobic001G051400 Sobic002G066800--Sobic005G087300 Sobic002G066800--Sobic002G078100 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic010G018900 Sobic010G018900 Sobic002G066800--Sobic010G018900 Sobic002G066800--Sobic003G010900 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic001G385000 Sobic001G385000 Sobic010G086300--Sobic001G385000 Sobic006G232800 Sobic006G232800 Sobic010G086300--Sobic006G232800 Sobic010G086300--Sobic003G394500 Sobic001G149000 Sobic001G149000 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic006G191000 Sobic006G191000 Sobic010G086300--Sobic006G191000 Sobic009G046900 Sobic009G046900 Sobic010G086300--Sobic009G046900 Sobic006G237500--Sobic005G123400 Sobic006G237500--Sobic003G393200 Sobic007G030100 Sobic007G030100 Sobic006G237500--Sobic007G030100 Sobic010G112600 Sobic010G112600 Sobic006G237500--Sobic010G112600 Sobic004G353300 Sobic004G353300 Sobic006G237500--Sobic004G353300 Sobic001G052100 Sobic001G052100 Sobic006G237500--Sobic001G052100 Sobic006G237500--Sobic001G051400 Sobic003G194800 Sobic003G194800 Sobic006G237500--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic006G237500--Sobic004G215600
Octagon: transcription factors


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