Gene annotation
Transcriptome id Sobic.010G091400.7,Sobic.010G091400.8,Sobic.010G091400.3,Sobic.010G091400.1,Sobic.010G091400.6,Sobic.010G091400.5,Sobic.010G091400.4,Sobic.010G091400.2
Synonym
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1W0VS82 , A0A1W0VS42 , A0A1W0VS46 , A0A1W0VS44 , A0A1W0VS39 , A0A1W0VS64 , A0A1W0VS41 , A0A1W0VS66
Pfam PF05496 PF00004
Panther DB PTHR23074 PTHR23074:SF87
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0009378four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT3G19740 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g12160.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033190
Brachypodium KQK18893 , KQK18892 , KQK18891
Barley HORVU5Hr1G104980.60 , HORVU5Hr1G104980.61 , HORVU5Hr1G104980.62 , HORVU5Hr1G104980.57 , HORVU5Hr1G104980.51 , HORVU5Hr1G104980.53 , HORVU5Hr1G104980.52 , HORVU5Hr1G104980.59 , HORVU5Hr1G104980.58 , HORVU4Hr1G059040.1 , HORVU4Hr1G059040.2 , HORVU6Hr1G075440.17 , HORVU6Hr1G075440.14 , HORVU6Hr1G075440.15 , HORVU6Hr1G075440.12 , HORVU6Hr1G075440.10 , HORVU6Hr1G075440.11 , HORVU6Hr1G075440.18 , HORVU6Hr1G075440.19 , HORVU5Hr1G104980.48 , HORVU5Hr1G104980.49 , HORVU5Hr1G104980.42 , HORVU5Hr1G104980.43 , HORVU5Hr1G104980.40 , HORVU5Hr1G104980.41 , HORVU5Hr1G104980.46 , HORVU5Hr1G104980.47 , HORVU5Hr1G104980.44 , HORVU5Hr1G104980.45 , HORVU7Hr1G037870.16 , HORVU5Hr1G104980.39 , HORVU5Hr1G104980.37 , HORVU5Hr1G104980.36 , HORVU5Hr1G104980.35 , HORVU5Hr1G104980.34 , HORVU5Hr1G104980.33 , HORVU5Hr1G104980.32 , HORVU5Hr1G104980.31 , HORVU5Hr1G104980.30 , HORVU5Hr1G104980.28 , HORVU5Hr1G104980.25 , HORVU5Hr1G104980.26 , HORVU5Hr1G104980.27 , HORVU5Hr1G104980.20 , HORVU5Hr1G104980.21 , HORVU5Hr1G104980.22 , HORVU5Hr1G104980.23 , HORVU4Hr1G059020.1 , HORVU5Hr1G104980.11 , HORVU5Hr1G104980.10 , HORVU5Hr1G104980.13 , HORVU5Hr1G104980.12 , HORVU5Hr1G104980.15 , HORVU5Hr1G104980.14 , HORVU5Hr1G104980.17 , HORVU5Hr1G104980.16 , HORVU5Hr1G104980.19 , HORVU5Hr1G104980.18 , HORVU5Hr1G104980.55 , HORVU5Hr1G104980.54 , HORVU5Hr1G104980.56 , HORVU7Hr1G037870.3 , HORVU7Hr1G037870.1 , HORVU7Hr1G037870.6 , HORVU7Hr1G037870.7 , HORVU7Hr1G037870.4 , HORVU7Hr1G037870.5 , HORVU7Hr1G037870.8 , HORVU7Hr1G037870.9 , HORVU6Hr1G038660.1 , HORVU6Hr1G075440.4 , HORVU6Hr1G075440.5 , HORVU6Hr1G075440.6 , HORVU6Hr1G075440.7 , HORVU6Hr1G075440.1 , HORVU6Hr1G075440.2 , HORVU6Hr1G075440.3 , HORVU6Hr1G075440.8 , HORVU6Hr1G075440.9 , HORVU5Hr1G104980.7 , HORVU5Hr1G104980.6 , HORVU5Hr1G104980.1 , HORVU5Hr1G104980.3 , HORVU5Hr1G104980.2 , HORVU5Hr1G104980.8 , HORVU1Hr1G005450.1 , HORVU7Hr1G037870.10 , HORVU7Hr1G037870.11 , HORVU7Hr1G037870.12 , HORVU7Hr1G037870.13 , HORVU7Hr1G037870.14 , HORVU7Hr1G037870.15 , HORVU7Hr1G037870.17 , HORVU7Hr1G037870.18 , HORVU7Hr1G037870.19 , HORVU7Hr1G037870.24 , HORVU7Hr1G037870.21 , HORVU7Hr1G037870.20 , HORVU7Hr1G037870.23 , HORVU7Hr1G037870.22 , HORVU6Hr1G075440.29 , HORVU6Hr1G075440.28 , HORVU6Hr1G075440.27 , HORVU6Hr1G075440.26 , HORVU6Hr1G075440.25 , HORVU6Hr1G075440.24 , HORVU6Hr1G075440.23 , HORVU6Hr1G075440.22 , HORVU6Hr1G075440.21 , HORVU6Hr1G075440.20
Wheat TraesCS6D02G284600 , TraesCS6D02G284600 , TraesCS6B02G333700 , TraesCS6B02G333700 , TraesCS6D02G284600 , TraesCS7B02G089500 , TraesCS6D02G284600 , TraesCS6B02G333700 , TraesCS7D02G186200 , TraesCS6A02G305500 , TraesCS6A02G305500 , TraesCS6A02G305500 , TraesCS6A02G305500 , TraesCS7A02G184700 , TraesCS7A02G184700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
2 Sobic.003G218200 pentatricopeptide containing protein, putative, expressed -
3 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
4 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
5 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
6 Sobic.003G297700 lipid-A-disaccharide synthase family protein, expressed K00748: lipid-A-disaccharide synthase
7 Sobic.002G252400 expressed protein K10706: SETX, senataxin
8 Sobic.002G356200 GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
9 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
10 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
11 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
12 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
13 Sobic.008G168200 expressed protein -
14 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
15 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
16 Sobic.008G152000 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
17 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
18 Sobic.001G466500 PPR repeat containing protein, expressed -
19 Sobic.002G406300 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
20 Sobic.004G126000 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K18914: adrenodoxin-NADP+ reductase


Gene co-expression network
sample Sobic010G091400 Sobic010G091400 Sobic002G398700 Sobic002G398700 Sobic010G091400--Sobic002G398700 Sobic003G218200 Sobic003G218200 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic003G021600 Sobic003G021600 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic003G218200--Sobic010G091400 Sobic004G097900 Sobic004G097900 Sobic003G218200--Sobic004G097900 Sobic003G218200--Sobic002G364900 Sobic003G218200--Sobic003G297700 Sobic002G386900 Sobic002G386900 Sobic003G218200--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic003G218200--Sobic006G191200 Sobic001G466500 Sobic001G466500 Sobic003G218200--Sobic001G466500 Sobic003G218200--Sobic002G386600 Sobic003G218200--Sobic002G398700 Sobic009G194000--Sobic003G181700 Sobic009G194000--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G194000--Sobic001G490900 Sobic010G169900 Sobic010G169900 Sobic009G194000--Sobic010G169900 Sobic004G122900 Sobic004G122900 Sobic009G194000--Sobic004G122900 Sobic001G308400 Sobic001G308400 Sobic009G194000--Sobic001G308400 Sobic003G190200 Sobic003G190200 Sobic009G194000--Sobic003G190200 Sobic006G060000 Sobic006G060000 Sobic009G194000--Sobic006G060000 Sobic001G141400 Sobic001G141400 Sobic009G194000--Sobic001G141400 Sobic003G021600--Sobic009G194000 Sobic003G021600--Sobic003G181700 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic008G037700--Sobic002G252400 Sobic002G084800 Sobic002G084800 Sobic008G037700--Sobic002G084800 Sobic009G116900 Sobic009G116900 Sobic008G037700--Sobic009G116900 Sobic008G037700--Sobic006G106300 Sobic008G176000 Sobic008G176000 Sobic008G037700--Sobic008G176000 Sobic008G037700--Sobic010G091400 Sobic008G037700--Sobic010G169900 Sobic003G409900 Sobic003G409900 Sobic008G037700--Sobic003G409900 Sobic008G037700--Sobic003G021600 Sobic006G198400 Sobic006G198400 Sobic003G297700--Sobic006G198400 Sobic003G297700--Sobic003G021600 Sobic002G343200 Sobic002G343200 Sobic003G297700--Sobic002G343200 Sobic003G393200 Sobic003G393200 Sobic003G297700--Sobic003G393200 Sobic001G051400 Sobic001G051400 Sobic003G297700--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic003G297700--Sobic005G087300 Sobic002G066800 Sobic002G066800 Sobic003G297700--Sobic002G066800 Sobic010G086300 Sobic010G086300 Sobic003G297700--Sobic010G086300 Sobic006G237500 Sobic006G237500 Sobic003G297700--Sobic006G237500 Sobic003G114400 Sobic003G114400 Sobic002G252400--Sobic003G114400 Sobic002G252400--Sobic010G169900 Sobic002G252400--Sobic008G037700 Sobic003G310300 Sobic003G310300 Sobic002G252400--Sobic003G310300 Sobic002G252400--Sobic009G116900 Sobic006G250800 Sobic006G250800 Sobic002G252400--Sobic006G250800 Sobic002G252400--Sobic002G084800 Sobic002G079000 Sobic002G079000 Sobic002G252400--Sobic002G079000 Sobic002G252400--Sobic003G021600 Sobic002G356200--Sobic005G026400 Sobic009G192300 Sobic009G192300 Sobic002G356200--Sobic009G192300 Sobic006G234700 Sobic006G234700 Sobic002G356200--Sobic006G234700 Sobic001G340300 Sobic001G340300 Sobic002G356200--Sobic001G340300 Sobic009G251200 Sobic009G251200 Sobic002G356200--Sobic009G251200 Sobic002G356200--Sobic009G194000 Sobic006G155100 Sobic006G155100 Sobic002G356200--Sobic006G155100 Sobic003G012000 Sobic003G012000 Sobic002G356200--Sobic003G012000 Sobic002G292800 Sobic002G292800 Sobic002G356200--Sobic002G292800 Sobic003G181700--Sobic009G194000 Sobic003G181700--Sobic003G021600 Sobic003G181700--Sobic004G122900 Sobic003G181700--Sobic001G490900 Sobic003G181700--Sobic010G169900 Sobic003G181700--Sobic002G227500 Sobic003G181700--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G181700--Sobic009G122500 Sobic007G172700 Sobic007G172700 Sobic003G181700--Sobic007G172700
Octagon: transcription factors


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