Gene annotation
Transcriptome id Sobic.003G218200.1
Synonym Sb03g027690
Functional annotation pentatricopeptide containing protein, putative, expressed
UniProt C5XQZ6
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF647
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54980 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g42620.2 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002143 , Zm00025a028697 , Zm00025a012971 , Zm00025a032950
Brachypodium -
Barley -
Wheat TraesCS3D02G233700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
2 Sobic.004G097900 expressed protein -
3 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G297700 lipid-A-disaccharide synthase family protein, expressed K00748: lipid-A-disaccharide synthase
5 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
6 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
7 Sobic.001G466500 PPR repeat containing protein, expressed -
8 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
9 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
10 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
11 Sobic.006G220400 exonuclease, putative, expressed -
12 Sobic.002G292800 MORN repeat domain containing protein, expressed -
13 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
14 Sobic.002G092050 - -
15 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
16 Sobic.004G334200 ribosomal protein S15 containing protein, expressed -
17 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
18 Sobic.002G078100 PPR repeat domain containing protein, putative, expressed -
19 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
20 Sobic.009G227100 expressed protein -


Gene co-expression network
sample Sobic003G218200 Sobic003G218200 Sobic010G091400 Sobic010G091400 Sobic003G218200--Sobic010G091400 Sobic004G097900 Sobic004G097900 Sobic003G218200--Sobic004G097900 Sobic002G364900 Sobic002G364900 Sobic003G218200--Sobic002G364900 Sobic003G297700 Sobic003G297700 Sobic003G218200--Sobic003G297700 Sobic002G386900 Sobic002G386900 Sobic003G218200--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic003G218200--Sobic006G191200 Sobic001G466500 Sobic001G466500 Sobic003G218200--Sobic001G466500 Sobic002G386600 Sobic002G386600 Sobic003G218200--Sobic002G386600 Sobic002G398700 Sobic002G398700 Sobic003G218200--Sobic002G398700 Sobic010G091400--Sobic002G398700 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic003G021600 Sobic003G021600 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic002G292800 Sobic002G292800 Sobic004G097900--Sobic002G292800 Sobic004G097900--Sobic002G386900 Sobic004G097900--Sobic006G191200 Sobic001G495400 Sobic001G495400 Sobic004G097900--Sobic001G495400 Sobic006G029100 Sobic006G029100 Sobic004G097900--Sobic006G029100 Sobic002G112600 Sobic002G112600 Sobic004G097900--Sobic002G112600 Sobic004G097900--Sobic003G218200 Sobic006G170900 Sobic006G170900 Sobic004G097900--Sobic006G170900 Sobic004G106250 Sobic004G106250 Sobic004G097900--Sobic004G106250 Sobic003G304400 Sobic003G304400 Sobic002G364900--Sobic003G304400 Sobic010G192600 Sobic010G192600 Sobic002G364900--Sobic010G192600 Sobic006G265600 Sobic006G265600 Sobic002G364900--Sobic006G265600 Sobic001G015400 Sobic001G015400 Sobic002G364900--Sobic001G015400 Sobic002G227500 Sobic002G227500 Sobic002G364900--Sobic002G227500 Sobic006G106300 Sobic006G106300 Sobic002G364900--Sobic006G106300 Sobic001G099900 Sobic001G099900 Sobic002G364900--Sobic001G099900 Sobic001G085800 Sobic001G085800 Sobic002G364900--Sobic001G085800 Sobic001G474400 Sobic001G474400 Sobic002G364900--Sobic001G474400 Sobic006G198400 Sobic006G198400 Sobic003G297700--Sobic006G198400 Sobic003G297700--Sobic003G021600 Sobic002G343200 Sobic002G343200 Sobic003G297700--Sobic002G343200 Sobic003G393200 Sobic003G393200 Sobic003G297700--Sobic003G393200 Sobic001G051400 Sobic001G051400 Sobic003G297700--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic003G297700--Sobic005G087300 Sobic002G066800 Sobic002G066800 Sobic003G297700--Sobic002G066800 Sobic010G086300 Sobic010G086300 Sobic003G297700--Sobic010G086300 Sobic006G237500 Sobic006G237500 Sobic003G297700--Sobic006G237500 Sobic002G386900--Sobic002G386600 Sobic002G386900--Sobic004G097900 Sobic001G123600 Sobic001G123600 Sobic002G386900--Sobic001G123600 Sobic002G386900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic002G386900--Sobic007G034200 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G386900--Sobic002G292800 Sobic006G191200--Sobic001G123600 Sobic002G296400 Sobic002G296400 Sobic006G191200--Sobic002G296400 Sobic006G191200--Sobic001G051400 Sobic002G078100 Sobic002G078100 Sobic006G191200--Sobic002G078100 Sobic006G191200--Sobic002G066800 Sobic003G299500 Sobic003G299500 Sobic006G191200--Sobic003G299500 Sobic006G191200--Sobic002G386900 Sobic009G120400 Sobic009G120400 Sobic006G191200--Sobic009G120400 Sobic006G191200--Sobic004G097900 Sobic001G466500--Sobic002G398700 Sobic005G026400 Sobic005G026400 Sobic001G466500--Sobic005G026400 Sobic001G466500--Sobic010G091400 Sobic001G466500--Sobic002G364900 Sobic002G092050 Sobic002G092050 Sobic001G466500--Sobic002G092050 Sobic002G155000 Sobic002G155000 Sobic001G466500--Sobic002G155000 Sobic006G193300 Sobic006G193300 Sobic001G466500--Sobic006G193300 Sobic001G466500--Sobic003G218200 Sobic001G466500--Sobic002G386600 Sobic002G386600--Sobic002G386900 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic002G386600--Sobic006G265600 Sobic002G386600--Sobic002G398700 Sobic002G160700 Sobic002G160700 Sobic002G386600--Sobic002G160700 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic002G398700--Sobic010G091400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G398700--Sobic002G386600 Sobic002G398700--Sobic002G364900
Octagon: transcription factors


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