Gene annotation
Transcriptome id Sobic.003G256800.2,Sobic.003G256800.3,Sobic.003G256800.1
Synonym Sb03g031160
Functional annotation RNA polymerase III subunit RPC82 family protein, putative, expressed
UniProt C5XGQ0 , A0A1W0VYW3 , A0A1W0VYY8
Pfam PF05645 PF08221
Panther DB PTHR12949
NCBI CDD KOG2587; RNA polymerase III (C) subunit
KEGG Orthology K03023; RPC3, DNA-directed RNA polymerase III subunit RPC3
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G49000 : RNA polymerase III subunit RPC82 family protein
RAP-DB (Rice) LOC_Os01g48720.1 : RNA polymerase III subunit RPC82 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028437
Brachypodium PNT72580 , PNT72581 , KQK09187 , KQK09186 , KQK09185
Barley HORVU3Hr1G062500.10 , HORVU3Hr1G062500.4 , HORVU3Hr1G062500.5 , HORVU3Hr1G062500.6 , HORVU3Hr1G062500.7 , HORVU3Hr1G062500.1 , HORVU3Hr1G062500.2 , HORVU3Hr1G062500.3 , HORVU3Hr1G062500.8 , HORVU3Hr1G062500.9
Wheat TraesCS3D02G268300 , TraesCS3D02G268300 , TraesCS3D02G268300 , TraesCS3A02G268200 , TraesCS3B02G302600 , TraesCS3B02G302600 , TraesCS3B02G302600 , TraesCS1B02G093900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G256800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
2 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
3 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
4 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
6 Sobic.002G296400 E3 ubiquitin-protein ligase HERC2, putative, expressed -
7 Sobic.002G363800 expressed protein -
8 Sobic.001G097900 expressed protein -
9 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
10 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
11 Sobic.008G152000 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
12 Sobic.006G245900 FAR1 family protein, expressed -
13 Sobic.002G381900 expressed protein -
14 Sobic.009G040250 - -
15 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
16 Sobic.001G340000 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
17 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
18 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
19 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
20 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2


Gene co-expression network
sample Sobic003G256800 Sobic003G256800 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic002G227500 Sobic002G227500 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G012000 Sobic003G012000 Sobic003G256800--Sobic003G012000 Sobic006G029100 Sobic006G029100 Sobic003G256800--Sobic006G029100 Sobic002G296400 Sobic002G296400 Sobic003G256800--Sobic002G296400 Sobic002G363800 Sobic002G363800 Sobic003G256800--Sobic002G363800 Sobic001G097900 Sobic001G097900 Sobic003G256800--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic003G256800--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic009G254100--Sobic006G106300 Sobic009G254100--Sobic003G256800 Sobic006G178100 Sobic006G178100 Sobic009G254100--Sobic006G178100 Sobic003G143800 Sobic003G143800 Sobic009G254100--Sobic003G143800 Sobic002G381900 Sobic002G381900 Sobic009G254100--Sobic002G381900 Sobic009G254100--Sobic001G097900 Sobic009G254100--Sobic002G398700 Sobic005G026400 Sobic005G026400 Sobic009G254100--Sobic005G026400 Sobic003G146600 Sobic003G146600 Sobic009G254100--Sobic003G146600 Sobic001G308400 Sobic001G308400 Sobic002G227500--Sobic001G308400 Sobic002G227500--Sobic003G021600 Sobic001G156900 Sobic001G156900 Sobic002G227500--Sobic001G156900 Sobic010G169900 Sobic010G169900 Sobic002G227500--Sobic010G169900 Sobic004G265500 Sobic004G265500 Sobic002G227500--Sobic004G265500 Sobic003G043000 Sobic003G043000 Sobic002G227500--Sobic003G043000 Sobic003G405500 Sobic003G405500 Sobic002G227500--Sobic003G405500 Sobic003G181700 Sobic003G181700 Sobic002G227500--Sobic003G181700 Sobic010G059500 Sobic010G059500 Sobic002G227500--Sobic010G059500 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic003G012000--Sobic010G059500 Sobic003G308500 Sobic003G308500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G012000--Sobic003G146600 Sobic004G096400 Sobic004G096400 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G012000--Sobic003G256800 Sobic002G371600 Sobic002G371600 Sobic006G029100--Sobic002G371600 Sobic002G160700 Sobic002G160700 Sobic006G029100--Sobic002G160700 Sobic002G386600 Sobic002G386600 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic006G029100--Sobic003G256800 Sobic006G029100--Sobic003G308500 Sobic001G373800 Sobic001G373800 Sobic006G029100--Sobic001G373800 Sobic001G200200 Sobic001G200200 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic006G191200 Sobic006G191200 Sobic002G296400--Sobic006G191200 Sobic006G245900 Sobic006G245900 Sobic002G296400--Sobic006G245900 Sobic002G296400--Sobic002G363800 Sobic003G113300 Sobic003G113300 Sobic002G296400--Sobic003G113300 Sobic002G296400--Sobic001G308400 Sobic009G008200 Sobic009G008200 Sobic002G296400--Sobic009G008200 Sobic002G296400--Sobic003G256800 Sobic002G066800 Sobic002G066800 Sobic002G296400--Sobic002G066800 Sobic001G123600 Sobic001G123600 Sobic002G296400--Sobic001G123600 Sobic002G363800--Sobic002G296400 Sobic002G363800--Sobic002G371600 Sobic001G125500 Sobic001G125500 Sobic002G363800--Sobic001G125500 Sobic002G363800--Sobic001G097900 Sobic002G363800--Sobic003G256800 Sobic008G092800 Sobic008G092800 Sobic002G363800--Sobic008G092800 Sobic007G145400 Sobic007G145400 Sobic002G363800--Sobic007G145400 Sobic001G340000 Sobic001G340000 Sobic002G363800--Sobic001G340000 Sobic003G230600 Sobic003G230600 Sobic002G363800--Sobic003G230600 Sobic010G192600 Sobic010G192600 Sobic001G097900--Sobic010G192600 Sobic001G474400 Sobic001G474400 Sobic001G097900--Sobic001G474400 Sobic001G445500 Sobic001G445500 Sobic001G097900--Sobic001G445500 Sobic001G097900--Sobic006G106300 Sobic005G110499 Sobic005G110499 Sobic001G097900--Sobic005G110499 Sobic001G097900--Sobic002G227500 Sobic001G097900--Sobic001G308400 Sobic001G097900--Sobic009G040250 Sobic005G114500 Sobic005G114500 Sobic001G097900--Sobic005G114500 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.