Gene annotation
Transcriptome id Sobic.008G152000.1,Sobic.008G152000.2,Sobic.008G152000.3,Sobic.008G152000.4,Sobic.008G152000.5
Synonym Sb08g020120
Functional annotation biotin--protein ligase, putative, expressed
UniProt C5YQZ8
Pfam PF03099
Panther DB PTHR10993 PTHR10993:SF11
NCBI CDD KOG0325; Lipoyltransferase
KEGG Orthology K03801; lipoyl(octanoyl) transferase
Gene Ontology GO:0006464; cellular protein modification process


Orthologs (automatic annotation)
TAIR AT1G47578 : Biotin/lipoate A/B protein ligase family
RAP-DB (Rice) LOC_Os12g40450.1 : biotin--protein ligase, putative, expressed
MaizeGDB (Corn) Zm00025a004544
Brachypodium PNT62749 , PNT62748 , PNT62747 , PNT62750 , KQJ93743 , KQJ93742 , KQJ93745 , KQJ93744
Barley -
Wheat TraesCS3D02G121900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G152000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
2 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
3 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
4 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
5 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
6 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
7 Sobic.004G172500 expressed protein -
8 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase
9 Sobic.006G277000 heat shock protein DnaJ, putative, expressed -
10 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
11 Sobic.007G076400 expressed protein -
12 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
13 Sobic.002G198100 pentatricopeptide, putative, expressed -
14 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -
15 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
16 Sobic.002G356200 GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
17 Sobic.002G291400 nicotinate-nucleotide pyrophosphorylase, putative, expressed K00767: nadC, nicotinate-nucleotide pyrophosphorylase (carboxylating)
18 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
19 Sobic.003G213400 expressed protein -
20 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3


Gene co-expression network
sample Sobic008G152000 Sobic008G152000 Sobic003G256800 Sobic003G256800 Sobic008G152000--Sobic003G256800 Sobic002G398700 Sobic002G398700 Sobic008G152000--Sobic002G398700 Sobic010G244900 Sobic010G244900 Sobic008G152000--Sobic010G244900 Sobic003G012000 Sobic003G012000 Sobic008G152000--Sobic003G012000 Sobic010G091400 Sobic010G091400 Sobic008G152000--Sobic010G091400 Sobic001G030000 Sobic001G030000 Sobic008G152000--Sobic001G030000 Sobic004G172500 Sobic004G172500 Sobic008G152000--Sobic004G172500 Sobic002G076500 Sobic002G076500 Sobic008G152000--Sobic002G076500 Sobic006G277000 Sobic006G277000 Sobic008G152000--Sobic006G277000 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic002G227500 Sobic002G227500 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G256800--Sobic003G012000 Sobic006G029100 Sobic006G029100 Sobic003G256800--Sobic006G029100 Sobic002G296400 Sobic002G296400 Sobic003G256800--Sobic002G296400 Sobic002G363800 Sobic002G363800 Sobic003G256800--Sobic002G363800 Sobic001G097900 Sobic001G097900 Sobic003G256800--Sobic001G097900 Sobic003G256800--Sobic002G398700 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic005G026400 Sobic005G026400 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G386600 Sobic002G386600 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic010G244900--Sobic004G172500 Sobic002G292900 Sobic002G292900 Sobic010G244900--Sobic002G292900 Sobic004G213800 Sobic004G213800 Sobic010G244900--Sobic004G213800 Sobic001G237600 Sobic001G237600 Sobic010G244900--Sobic001G237600 Sobic004G320700 Sobic004G320700 Sobic010G244900--Sobic004G320700 Sobic006G039400 Sobic006G039400 Sobic010G244900--Sobic006G039400 Sobic003G043000 Sobic003G043000 Sobic010G244900--Sobic003G043000 Sobic003G241700 Sobic003G241700 Sobic010G244900--Sobic003G241700 Sobic005G150600 Sobic005G150600 Sobic010G244900--Sobic005G150600 Sobic010G059500 Sobic010G059500 Sobic003G012000--Sobic010G059500 Sobic003G308500 Sobic003G308500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G146600 Sobic003G146600 Sobic003G012000--Sobic003G146600 Sobic004G096400 Sobic004G096400 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G012000--Sobic003G256800 Sobic010G091400--Sobic002G398700 Sobic003G218200 Sobic003G218200 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic001G308400 Sobic001G308400 Sobic001G030000--Sobic001G308400 Sobic004G141800 Sobic004G141800 Sobic001G030000--Sobic004G141800 Sobic010G169900 Sobic010G169900 Sobic001G030000--Sobic010G169900 Sobic001G030000--Sobic003G043000 Sobic004G265500 Sobic004G265500 Sobic001G030000--Sobic004G265500 Sobic001G030000--Sobic002G227500 Sobic005G110499 Sobic005G110499 Sobic001G030000--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic001G030000--Sobic003G405500 Sobic003G163200 Sobic003G163200 Sobic001G030000--Sobic003G163200 Sobic004G172500--Sobic010G244900 Sobic004G172500--Sobic002G076500 Sobic004G172500--Sobic005G150600 Sobic003G363700 Sobic003G363700 Sobic004G172500--Sobic003G363700 Sobic004G172500--Sobic001G030000 Sobic004G172500--Sobic001G237600 Sobic009G228000 Sobic009G228000 Sobic004G172500--Sobic009G228000 Sobic004G172500--Sobic004G213800 Sobic003G272700 Sobic003G272700 Sobic004G172500--Sobic003G272700 Sobic007G153500 Sobic007G153500 Sobic002G076500--Sobic007G153500 Sobic008G116700 Sobic008G116700 Sobic002G076500--Sobic008G116700 Sobic003G432800 Sobic003G432800 Sobic002G076500--Sobic003G432800 Sobic002G322400 Sobic002G322400 Sobic002G076500--Sobic002G322400 Sobic006G210700 Sobic006G210700 Sobic002G076500--Sobic006G210700 Sobic008G019532 Sobic008G019532 Sobic002G076500--Sobic008G019532 Sobic005G087300 Sobic005G087300 Sobic002G076500--Sobic005G087300 Sobic002G076500--Sobic004G172500 Sobic001G051400 Sobic001G051400 Sobic002G076500--Sobic001G051400 Sobic004G241900 Sobic004G241900 Sobic006G277000--Sobic004G241900 Sobic006G166200 Sobic006G166200 Sobic006G277000--Sobic006G166200 Sobic006G277000--Sobic001G015400 Sobic006G196300 Sobic006G196300 Sobic006G277000--Sobic006G196300 Sobic006G277000--Sobic002G398700 Sobic007G005500 Sobic007G005500 Sobic006G277000--Sobic007G005500 Sobic002G238400 Sobic002G238400 Sobic006G277000--Sobic002G238400 Sobic001G474400 Sobic001G474400 Sobic006G277000--Sobic001G474400 Sobic007G112600 Sobic007G112600 Sobic006G277000--Sobic007G112600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.