Gene annotation
Transcriptome id Sobic.008G037700.1
Synonym Sb08g003240
Functional annotation pentatricopeptide containing protein, putative, expressed
UniProt A0A1Z5R581
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF724
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G22960 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g05640.1 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029044 , Zm00025a033491 , Zm00025a053892
Brachypodium PNT65433 , KQJ92221 , KQJ92223 , KQJ92222 , PNT65429 , PNT65428 , PNT65427 , PNT65432 , PNT65430 , PNT65431
Barley HORVU5Hr1G042300.12 , HORVU5Hr1G042300.10 , HORVU5Hr1G042300.11 , HORVU5Hr1G042300.8 , HORVU5Hr1G042300.9 , HORVU5Hr1G042300.2 , HORVU5Hr1G042300.3 , HORVU5Hr1G042300.1 , HORVU5Hr1G042300.6 , HORVU5Hr1G042300.7 , HORVU5Hr1G042300.4 , HORVU5Hr1G042300.5
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G252400 expressed protein K10706: SETX, senataxin
2 Sobic.002G084800 expressed protein -
3 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
4 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
5 Sobic.008G176000 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
6 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
7 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
8 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
9 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
10 Sobic.002G198100 pentatricopeptide, putative, expressed -
11 Sobic.003G310300 pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
13 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
14 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
15 Sobic.002G363800 expressed protein -
16 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
17 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
18 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
19 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
20 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23


Gene co-expression network
sample Sobic008G037700 Sobic008G037700 Sobic002G252400 Sobic002G252400 Sobic008G037700--Sobic002G252400 Sobic002G084800 Sobic002G084800 Sobic008G037700--Sobic002G084800 Sobic009G116900 Sobic009G116900 Sobic008G037700--Sobic009G116900 Sobic006G106300 Sobic006G106300 Sobic008G037700--Sobic006G106300 Sobic008G176000 Sobic008G176000 Sobic008G037700--Sobic008G176000 Sobic010G091400 Sobic010G091400 Sobic008G037700--Sobic010G091400 Sobic010G169900 Sobic010G169900 Sobic008G037700--Sobic010G169900 Sobic003G409900 Sobic003G409900 Sobic008G037700--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic008G037700--Sobic003G021600 Sobic003G114400 Sobic003G114400 Sobic002G252400--Sobic003G114400 Sobic002G252400--Sobic010G169900 Sobic002G252400--Sobic008G037700 Sobic003G310300 Sobic003G310300 Sobic002G252400--Sobic003G310300 Sobic002G252400--Sobic009G116900 Sobic006G250800 Sobic006G250800 Sobic002G252400--Sobic006G250800 Sobic002G252400--Sobic002G084800 Sobic002G079000 Sobic002G079000 Sobic002G252400--Sobic002G079000 Sobic002G252400--Sobic003G021600 Sobic007G076400 Sobic007G076400 Sobic002G084800--Sobic007G076400 Sobic003G235100 Sobic003G235100 Sobic002G084800--Sobic003G235100 Sobic002G084800--Sobic006G250800 Sobic007G172700 Sobic007G172700 Sobic002G084800--Sobic007G172700 Sobic002G084800--Sobic002G079000 Sobic007G087000 Sobic007G087000 Sobic002G084800--Sobic007G087000 Sobic001G188400 Sobic001G188400 Sobic002G084800--Sobic001G188400 Sobic002G084800--Sobic008G037700 Sobic002G084800--Sobic009G116900 Sobic009G116900--Sobic007G172700 Sobic009G116900--Sobic003G235100 Sobic001G257800 Sobic001G257800 Sobic009G116900--Sobic001G257800 Sobic009G116900--Sobic006G250800 Sobic004G350700 Sobic004G350700 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic008G055500 Sobic008G055500 Sobic009G116900--Sobic008G055500 Sobic008G152700 Sobic008G152700 Sobic009G116900--Sobic008G152700 Sobic002G198100 Sobic002G198100 Sobic009G116900--Sobic002G198100 Sobic006G106300--Sobic003G409900 Sobic006G106300--Sobic003G021600 Sobic002G398700 Sobic002G398700 Sobic006G106300--Sobic002G398700 Sobic001G097900 Sobic001G097900 Sobic006G106300--Sobic001G097900 Sobic001G015400 Sobic001G015400 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic001G474400 Sobic001G474400 Sobic006G106300--Sobic001G474400 Sobic002G364900 Sobic002G364900 Sobic006G106300--Sobic002G364900 Sobic008G176000--Sobic008G037700 Sobic001G118000 Sobic001G118000 Sobic008G176000--Sobic001G118000 Sobic003G346400 Sobic003G346400 Sobic008G176000--Sobic003G346400 Sobic006G021700 Sobic006G021700 Sobic008G176000--Sobic006G021700 Sobic008G176000--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic008G176000--Sobic006G128100 Sobic001G156900 Sobic001G156900 Sobic008G176000--Sobic001G156900 Sobic010G192600 Sobic010G192600 Sobic008G176000--Sobic010G192600 Sobic001G030000 Sobic001G030000 Sobic008G176000--Sobic001G030000 Sobic010G091400--Sobic002G398700 Sobic003G218200 Sobic003G218200 Sobic010G091400--Sobic003G218200 Sobic009G194000 Sobic009G194000 Sobic010G091400--Sobic009G194000 Sobic010G091400--Sobic003G021600 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic003G181700 Sobic003G181700 Sobic010G091400--Sobic003G181700 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic010G169900--Sobic006G128100 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic003G409900--Sobic006G106300 Sobic003G409900--Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic003G409900--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G409900--Sobic009G122500 Sobic003G409900--Sobic003G021600 Sobic010G223400 Sobic010G223400 Sobic003G409900--Sobic010G223400 Sobic004G254800 Sobic004G254800 Sobic003G409900--Sobic004G254800 Sobic003G409900--Sobic001G015400 Sobic003G409900--Sobic009G128500 Sobic003G021600--Sobic009G194000 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200
Octagon: transcription factors


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