Gene annotation
Transcriptome id Sobic.002G252400.1
Synonym
Functional annotation expressed protein
UniProt A0A1W0W5N2
Pfam PF13245 PF13087
Panther DB PTHR10887 PTHR10887:SF140
NCBI CDD KOG1803; DNA helicase
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16800 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g32180.1 : expressed protein
MaizeGDB (Corn) Zm00025a047498
Brachypodium PNT64866 , PNT64867 , PNT64864 , PNT64865 , PNT64868 , KQJ90830 , KQJ90831
Barley HORVU5Hr1G074520.17 , HORVU5Hr1G074520.15 , HORVU5Hr1G074520.10 , HORVU5Hr1G074520.18 , HORVU5Hr1G074520.9 , HORVU5Hr1G074520.8 , HORVU5Hr1G074520.7 , HORVU5Hr1G074520.6 , HORVU5Hr1G074520.5 , HORVU5Hr1G074520.4 , HORVU5Hr1G074520.3 , HORVU5Hr1G074520.2 , HORVU5Hr1G074520.1 , HORVU5Hr1G074520.28 , HORVU5Hr1G074520.26 , HORVU5Hr1G074520.27 , HORVU5Hr1G074520.24 , HORVU5Hr1G074520.25 , HORVU5Hr1G074520.22 , HORVU5Hr1G074520.23 , HORVU5Hr1G074520.20 , HORVU5Hr1G074520.21 , HORVU5Hr1G074520.16 , HORVU5Hr1G074520.14 , HORVU5Hr1G074520.13 , HORVU5Hr1G074520.12 , HORVU5Hr1G074520.11 , HORVU5Hr1G074520.19
Wheat TraesCS5D02G282000 , TraesCS5D02G282000 , TraesCS5D02G282000 , TraesCS5A02G274400 , TraesCS5A02G274400 , TraesCS5B02G274000 , TraesCS5B02G274000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
2 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
3 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
4 Sobic.003G310300 pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
6 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
7 Sobic.002G084800 expressed protein -
8 Sobic.002G079000 expressed protein -
9 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
10 Sobic.004G193300 phosphatidylinositolglycan class N family protein, expressed K05285: GPI ethanolamine phosphate transferase 1
11 Sobic.003G296900 expressed protein -
12 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
13 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
14 Sobic.003G241700 SET domain containing protein, expressed -
15 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
16 Sobic.007G172700 ECT5, putative, expressed -
17 Sobic.003G043000 expressed protein -
18 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
19 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
20 Sobic.003G316200 transmembrane protein 49, putative, expressed -


Gene co-expression network
sample Sobic002G252400 Sobic002G252400 Sobic003G114400 Sobic003G114400 Sobic002G252400--Sobic003G114400 Sobic010G169900 Sobic010G169900 Sobic002G252400--Sobic010G169900 Sobic008G037700 Sobic008G037700 Sobic002G252400--Sobic008G037700 Sobic003G310300 Sobic003G310300 Sobic002G252400--Sobic003G310300 Sobic009G116900 Sobic009G116900 Sobic002G252400--Sobic009G116900 Sobic006G250800 Sobic006G250800 Sobic002G252400--Sobic006G250800 Sobic002G084800 Sobic002G084800 Sobic002G252400--Sobic002G084800 Sobic002G079000 Sobic002G079000 Sobic002G252400--Sobic002G079000 Sobic003G021600 Sobic003G021600 Sobic002G252400--Sobic003G021600 Sobic006G260500 Sobic006G260500 Sobic003G114400--Sobic006G260500 Sobic005G062200 Sobic005G062200 Sobic003G114400--Sobic005G062200 Sobic008G088872 Sobic008G088872 Sobic003G114400--Sobic008G088872 Sobic006G077300 Sobic006G077300 Sobic003G114400--Sobic006G077300 Sobic005G090300 Sobic005G090300 Sobic003G114400--Sobic005G090300 Sobic006G184900 Sobic006G184900 Sobic003G114400--Sobic006G184900 Sobic003G114400--Sobic002G252400 Sobic003G316200 Sobic003G316200 Sobic003G114400--Sobic003G316200 Sobic004G241900 Sobic004G241900 Sobic003G114400--Sobic004G241900 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic008G037700--Sobic002G252400 Sobic008G037700--Sobic002G084800 Sobic008G037700--Sobic009G116900 Sobic006G106300 Sobic006G106300 Sobic008G037700--Sobic006G106300 Sobic008G176000 Sobic008G176000 Sobic008G037700--Sobic008G176000 Sobic010G091400 Sobic010G091400 Sobic008G037700--Sobic010G091400 Sobic008G037700--Sobic010G169900 Sobic003G409900 Sobic003G409900 Sobic008G037700--Sobic003G409900 Sobic008G037700--Sobic003G021600 Sobic003G310300--Sobic002G252400 Sobic003G043000 Sobic003G043000 Sobic003G310300--Sobic003G043000 Sobic003G296900 Sobic003G296900 Sobic003G310300--Sobic003G296900 Sobic003G310300--Sobic008G037700 Sobic003G241700 Sobic003G241700 Sobic003G310300--Sobic003G241700 Sobic003G107500 Sobic003G107500 Sobic003G310300--Sobic003G107500 Sobic004G265500 Sobic004G265500 Sobic003G310300--Sobic004G265500 Sobic003G308500 Sobic003G308500 Sobic003G310300--Sobic003G308500 Sobic005G038500 Sobic005G038500 Sobic003G310300--Sobic005G038500 Sobic007G172700 Sobic007G172700 Sobic009G116900--Sobic007G172700 Sobic003G235100 Sobic003G235100 Sobic009G116900--Sobic003G235100 Sobic001G257800 Sobic001G257800 Sobic009G116900--Sobic001G257800 Sobic009G116900--Sobic006G250800 Sobic004G350700 Sobic004G350700 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic008G055500 Sobic008G055500 Sobic009G116900--Sobic008G055500 Sobic008G152700 Sobic008G152700 Sobic009G116900--Sobic008G152700 Sobic002G198100 Sobic002G198100 Sobic009G116900--Sobic002G198100 Sobic006G250800--Sobic002G079000 Sobic001G188400 Sobic001G188400 Sobic006G250800--Sobic001G188400 Sobic009G217400 Sobic009G217400 Sobic006G250800--Sobic009G217400 Sobic006G250800--Sobic003G316200 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic007G087000 Sobic007G087000 Sobic006G250800--Sobic007G087000 Sobic001G253300 Sobic001G253300 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100 Sobic007G076400 Sobic007G076400 Sobic002G084800--Sobic007G076400 Sobic002G084800--Sobic003G235100 Sobic002G084800--Sobic006G250800 Sobic002G084800--Sobic007G172700 Sobic002G084800--Sobic002G079000 Sobic002G084800--Sobic007G087000 Sobic002G084800--Sobic001G188400 Sobic002G084800--Sobic008G037700 Sobic002G084800--Sobic009G116900 Sobic002G079000--Sobic007G087000 Sobic002G079000--Sobic010G169900 Sobic010G213500 Sobic010G213500 Sobic002G079000--Sobic010G213500 Sobic004G198600 Sobic004G198600 Sobic002G079000--Sobic004G198600 Sobic002G079000--Sobic006G128100 Sobic002G079000--Sobic006G250800 Sobic002G079000--Sobic007G172700 Sobic001G237600 Sobic001G237600 Sobic002G079000--Sobic001G237600 Sobic002G079000--Sobic001G490900 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200
Octagon: transcription factors


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