Gene annotation
Transcriptome id Sobic.009G116900.1,Sobic.009G116900.2,Sobic.009G116900.3
Synonym
Functional annotation CW-type Zinc Finger, putative, expressed
UniProt A0A1B6P8M1 , A0A1B6P8B6
Pfam PF07496
Panther DB PTHR23336 PTHR23336:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G15730 : CW-type Zinc Finger
RAP-DB (Rice) LOC_Os05g30790.1 : CW-type Zinc Finger, putative, expressed
MaizeGDB (Corn) Zm00025a037645
Brachypodium KQK06629
Barley HORVU1Hr1G058250.6 , HORVU1Hr1G058250.2 , HORVU1Hr1G058250.9 , HORVU1Hr1G058250.8 , HORVU1Hr1G058250.7 , HORVU1Hr1G058250.5 , HORVU1Hr1G058250.4 , HORVU1Hr1G058250.3 , HORVU1Hr1G058250.1 , HORVU1Hr1G058250.12 , HORVU1Hr1G058250.11 , HORVU1Hr1G058250.10
Wheat TraesCS1A02G237200 , TraesCS1A02G237200 , TraesCS1A02G237200 , TraesCS1A02G237200 , TraesCS1A02G237200 , TraesCS1D02G235200 , TraesCS1D02G235200 , TraesCS1D02G235200 , TraesCS1D02G235200 , TraesCS1B02G246700 , TraesCS1B02G246700 , TraesCS1B02G246700 , TraesCS1B02G246700 , TraesCS1B02G246700 , TraesCS1B02G246700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G172700 ECT5, putative, expressed -
2 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
3 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
4 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
5 Sobic.004G350700 kelch repeat protein, putative, expressed -
6 Sobic.001G404900 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
7 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
8 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
9 Sobic.002G198100 pentatricopeptide, putative, expressed -
10 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
11 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
12 Sobic.002G079000 expressed protein -
13 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
14 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
15 Sobic.002G084800 expressed protein -
16 Sobic.002G252400 expressed protein K10706: SETX, senataxin
17 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
18 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
19 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
20 Sobic.008G097900 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic009G116900 Sobic009G116900 Sobic007G172700 Sobic007G172700 Sobic009G116900--Sobic007G172700 Sobic003G235100 Sobic003G235100 Sobic009G116900--Sobic003G235100 Sobic001G257800 Sobic001G257800 Sobic009G116900--Sobic001G257800 Sobic006G250800 Sobic006G250800 Sobic009G116900--Sobic006G250800 Sobic004G350700 Sobic004G350700 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic008G055500 Sobic008G055500 Sobic009G116900--Sobic008G055500 Sobic008G152700 Sobic008G152700 Sobic009G116900--Sobic008G152700 Sobic002G198100 Sobic002G198100 Sobic009G116900--Sobic002G198100 Sobic006G060000 Sobic006G060000 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic003G190200 Sobic003G190200 Sobic007G172700--Sobic003G190200 Sobic003G394500 Sobic003G394500 Sobic007G172700--Sobic003G394500 Sobic003G058500 Sobic003G058500 Sobic007G172700--Sobic003G058500 Sobic002G355800 Sobic002G355800 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic009G046900 Sobic009G046900 Sobic003G235100--Sobic009G046900 Sobic007G004300 Sobic007G004300 Sobic003G235100--Sobic007G004300 Sobic003G235100--Sobic009G116900 Sobic002G084800 Sobic002G084800 Sobic003G235100--Sobic002G084800 Sobic005G145201 Sobic005G145201 Sobic003G235100--Sobic005G145201 Sobic003G235100--Sobic008G152700 Sobic003G402800 Sobic003G402800 Sobic003G235100--Sobic003G402800 Sobic003G235100--Sobic004G350700 Sobic004G107100 Sobic004G107100 Sobic003G235100--Sobic004G107100 Sobic001G257800--Sobic003G402800 Sobic003G385300 Sobic003G385300 Sobic001G257800--Sobic003G385300 Sobic010G134650 Sobic010G134650 Sobic001G257800--Sobic010G134650 Sobic004G064200 Sobic004G064200 Sobic001G257800--Sobic004G064200 Sobic010G024400 Sobic010G024400 Sobic001G257800--Sobic010G024400 Sobic004G176200 Sobic004G176200 Sobic001G257800--Sobic004G176200 Sobic002G074800 Sobic002G074800 Sobic001G257800--Sobic002G074800 Sobic004G261700 Sobic004G261700 Sobic001G257800--Sobic004G261700 Sobic001G257800--Sobic008G152700 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic001G188400 Sobic001G188400 Sobic006G250800--Sobic001G188400 Sobic009G217400 Sobic009G217400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic007G087000 Sobic007G087000 Sobic006G250800--Sobic007G087000 Sobic001G253300 Sobic001G253300 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100 Sobic004G350700--Sobic008G055500 Sobic004G350700--Sobic003G394500 Sobic004G350700--Sobic003G385300 Sobic004G350700--Sobic001G424800 Sobic004G350700--Sobic006G060000 Sobic001G149000 Sobic001G149000 Sobic004G350700--Sobic001G149000 Sobic004G350700--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic004G350700--Sobic001G114200 Sobic003G117800 Sobic003G117800 Sobic004G350700--Sobic003G117800 Sobic001G404900--Sobic009G116900 Sobic001G342900 Sobic001G342900 Sobic001G404900--Sobic001G342900 Sobic009G128500 Sobic009G128500 Sobic001G404900--Sobic009G128500 Sobic001G404900--Sobic002G198100 Sobic001G404900--Sobic003G235100 Sobic002G095100 Sobic002G095100 Sobic001G404900--Sobic002G095100 Sobic001G532400 Sobic001G532400 Sobic001G404900--Sobic001G532400 Sobic001G356100 Sobic001G356100 Sobic001G404900--Sobic001G356100 Sobic001G404900--Sobic009G217400 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic008G055500--Sobic004G350700 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic008G055500--Sobic001G257800 Sobic008G055500--Sobic008G152700 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic008G152700--Sobic003G117800 Sobic004G077300 Sobic004G077300 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic008G152700--Sobic007G172700 Sobic003G428000 Sobic003G428000 Sobic008G152700--Sobic003G428000 Sobic008G152700--Sobic003G394500 Sobic001G385000 Sobic001G385000 Sobic008G152700--Sobic001G385000 Sobic002G198100--Sobic009G116900 Sobic002G198100--Sobic003G235100 Sobic006G115100 Sobic006G115100 Sobic002G198100--Sobic006G115100 Sobic007G022600 Sobic007G022600 Sobic002G198100--Sobic007G022600 Sobic002G198100--Sobic001G356100 Sobic002G198100--Sobic002G084800 Sobic002G200000 Sobic002G200000 Sobic002G198100--Sobic002G200000 Sobic008G037700 Sobic008G037700 Sobic002G198100--Sobic008G037700 Sobic003G213400 Sobic003G213400 Sobic002G198100--Sobic003G213400
Octagon: transcription factors


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