Gene annotation
Transcriptome id Sobic.002G084800.1
Synonym Sb02g007060, LCD1
Functional annotation expressed protein
UniProt C5XDI9
Pfam PF11891
Panther DB PTHR31038 PTHR31038:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37860 : Protein of unknown function (DUF3411)
RAP-DB (Rice) LOC_Os07g13590.1 : expressed protein
MaizeGDB (Corn) Zm00025a045469
Brachypodium KQK20289
Barley HORVU2Hr1G049760.18 , HORVU2Hr1G049760.19 , HORVU2Hr1G049760.10 , HORVU2Hr1G049760.11 , HORVU2Hr1G049760.12 , HORVU2Hr1G049760.13 , HORVU2Hr1G049760.14 , HORVU2Hr1G049760.15 , HORVU2Hr1G049760.16 , HORVU2Hr1G049760.17 , HORVU2Hr1G049760.21 , HORVU2Hr1G049760.20 , HORVU2Hr1G049760.8 , HORVU2Hr1G049760.9 , HORVU2Hr1G049760.2 , HORVU2Hr1G049760.3 , HORVU2Hr1G049760.1 , HORVU2Hr1G049760.6 , HORVU2Hr1G049760.7 , HORVU2Hr1G049760.4 , HORVU2Hr1G049760.5
Wheat TraesCS2B02G261500 , TraesCS2A02G234300 , TraesCS2D02G241700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G076400 expressed protein -
2 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
3 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.007G172700 ECT5, putative, expressed -
5 Sobic.002G079000 expressed protein -
6 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
7 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
8 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
9 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
10 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
11 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
12 Sobic.007G022600 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
13 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
14 Sobic.004G350700 kelch repeat protein, putative, expressed -
15 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
16 Sobic.002G252400 expressed protein K10706: SETX, senataxin
17 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
18 Sobic.002G198100 pentatricopeptide, putative, expressed -
19 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
20 Sobic.003G213400 expressed protein -


Gene co-expression network
sample Sobic002G084800 Sobic002G084800 Sobic007G076400 Sobic007G076400 Sobic002G084800--Sobic007G076400 Sobic003G235100 Sobic003G235100 Sobic002G084800--Sobic003G235100 Sobic006G250800 Sobic006G250800 Sobic002G084800--Sobic006G250800 Sobic007G172700 Sobic007G172700 Sobic002G084800--Sobic007G172700 Sobic002G079000 Sobic002G079000 Sobic002G084800--Sobic002G079000 Sobic007G087000 Sobic007G087000 Sobic002G084800--Sobic007G087000 Sobic001G188400 Sobic001G188400 Sobic002G084800--Sobic001G188400 Sobic008G037700 Sobic008G037700 Sobic002G084800--Sobic008G037700 Sobic009G116900 Sobic009G116900 Sobic002G084800--Sobic009G116900 Sobic007G076400--Sobic002G084800 Sobic002G200000 Sobic002G200000 Sobic007G076400--Sobic002G200000 Sobic007G076400--Sobic007G087000 Sobic007G076400--Sobic002G079000 Sobic008G116700 Sobic008G116700 Sobic007G076400--Sobic008G116700 Sobic007G076400--Sobic006G250800 Sobic006G060000 Sobic006G060000 Sobic007G076400--Sobic006G060000 Sobic007G076400--Sobic001G188400 Sobic006G115100 Sobic006G115100 Sobic007G076400--Sobic006G115100 Sobic009G046900 Sobic009G046900 Sobic003G235100--Sobic009G046900 Sobic007G004300 Sobic007G004300 Sobic003G235100--Sobic007G004300 Sobic003G235100--Sobic009G116900 Sobic003G235100--Sobic002G084800 Sobic005G145201 Sobic005G145201 Sobic003G235100--Sobic005G145201 Sobic008G152700 Sobic008G152700 Sobic003G235100--Sobic008G152700 Sobic003G402800 Sobic003G402800 Sobic003G235100--Sobic003G402800 Sobic004G350700 Sobic004G350700 Sobic003G235100--Sobic004G350700 Sobic004G107100 Sobic004G107100 Sobic003G235100--Sobic004G107100 Sobic006G250800--Sobic002G079000 Sobic006G250800--Sobic001G188400 Sobic009G217400 Sobic009G217400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic006G250800--Sobic007G087000 Sobic001G253300 Sobic001G253300 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic003G190200 Sobic003G190200 Sobic007G172700--Sobic003G190200 Sobic003G394500 Sobic003G394500 Sobic007G172700--Sobic003G394500 Sobic003G058500 Sobic003G058500 Sobic007G172700--Sobic003G058500 Sobic002G355800 Sobic002G355800 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic002G079000--Sobic007G087000 Sobic010G169900 Sobic010G169900 Sobic002G079000--Sobic010G169900 Sobic010G213500 Sobic010G213500 Sobic002G079000--Sobic010G213500 Sobic004G198600 Sobic004G198600 Sobic002G079000--Sobic004G198600 Sobic006G128100 Sobic006G128100 Sobic002G079000--Sobic006G128100 Sobic002G079000--Sobic006G250800 Sobic002G079000--Sobic007G172700 Sobic001G237600 Sobic001G237600 Sobic002G079000--Sobic001G237600 Sobic001G490900 Sobic001G490900 Sobic002G079000--Sobic001G490900 Sobic007G087000--Sobic002G079000 Sobic007G087000--Sobic007G076400 Sobic007G087000--Sobic002G306100 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic007G087000--Sobic001G237600 Sobic007G087000--Sobic007G172700 Sobic009G107300 Sobic009G107300 Sobic007G087000--Sobic009G107300 Sobic001G188400--Sobic006G115100 Sobic001G188400--Sobic001G253300 Sobic001G188400--Sobic003G316200 Sobic001G188400--Sobic006G250800 Sobic001G188400--Sobic007G004300 Sobic001G188400--Sobic002G079000 Sobic001G188400--Sobic002G355800 Sobic001G188400--Sobic002G084800 Sobic008G055500 Sobic008G055500 Sobic001G188400--Sobic008G055500 Sobic002G252400 Sobic002G252400 Sobic008G037700--Sobic002G252400 Sobic008G037700--Sobic002G084800 Sobic008G037700--Sobic009G116900 Sobic006G106300 Sobic006G106300 Sobic008G037700--Sobic006G106300 Sobic008G176000 Sobic008G176000 Sobic008G037700--Sobic008G176000 Sobic010G091400 Sobic010G091400 Sobic008G037700--Sobic010G091400 Sobic008G037700--Sobic010G169900 Sobic003G409900 Sobic003G409900 Sobic008G037700--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic008G037700--Sobic003G021600 Sobic009G116900--Sobic007G172700 Sobic009G116900--Sobic003G235100 Sobic001G257800 Sobic001G257800 Sobic009G116900--Sobic001G257800 Sobic009G116900--Sobic006G250800 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic009G116900--Sobic008G055500 Sobic009G116900--Sobic008G152700 Sobic002G198100 Sobic002G198100 Sobic009G116900--Sobic002G198100
Octagon: transcription factors


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