Gene annotation
Transcriptome id Sobic.002G198100.4,Sobic.002G198100.5,Sobic.002G198100.2
Synonym Sb02g024422
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QCG4 , A0A1B6QCF8 , A0A1W0W4Y8
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF169
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37320 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g13990.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a057472 , Zm00025a056026
Brachypodium PNT70336 , PNT70335 , KQK03876
Barley HORVU7Hr1G107760.2 , HORVU7Hr1G107760.3 , HORVU7Hr1G107760.1 , HORVU7Hr1G107760.6 , HORVU7Hr1G107760.7 , HORVU7Hr1G107760.4 , HORVU7Hr1G107760.5 , HORVU7Hr1G107760.8 , HORVU7Hr1G107760.9 , HORVU7Hr1G107760.10 , HORVU7Hr1G107760.11 , HORVU7Hr1G107760.12 , HORVU7Hr1G107760.13 , HORVU7Hr1G107760.14 , HORVU7Hr1G107760.15 , HORVU7Hr1G107760.16 , HORVU7Hr1G107760.17 , HORVU7Hr1G107760.18 , HORVU7Hr1G107760.19
Wheat TraesCS7B02G373300 , TraesCS7B02G373300 , TraesCS7B02G373300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
2 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
3 Sobic.006G115100 expressed protein -
4 Sobic.007G022600 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
5 Sobic.001G356100 GPI-anchored wall transfer protein 1, putative, expressed K05283: glucosaminylphosphatidylinositol acyltransferase
6 Sobic.002G084800 expressed protein -
7 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
8 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
9 Sobic.003G213400 expressed protein -
10 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
11 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
12 Sobic.004G350700 kelch repeat protein, putative, expressed -
13 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
14 Sobic.001G404900 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
15 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
16 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
17 Sobic.002G079000 expressed protein -
18 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
19 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
20 Sobic.001G532400 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase


Gene co-expression network
sample Sobic002G198100 Sobic002G198100 Sobic009G116900 Sobic009G116900 Sobic002G198100--Sobic009G116900 Sobic003G235100 Sobic003G235100 Sobic002G198100--Sobic003G235100 Sobic006G115100 Sobic006G115100 Sobic002G198100--Sobic006G115100 Sobic007G022600 Sobic007G022600 Sobic002G198100--Sobic007G022600 Sobic001G356100 Sobic001G356100 Sobic002G198100--Sobic001G356100 Sobic002G084800 Sobic002G084800 Sobic002G198100--Sobic002G084800 Sobic002G200000 Sobic002G200000 Sobic002G198100--Sobic002G200000 Sobic008G037700 Sobic008G037700 Sobic002G198100--Sobic008G037700 Sobic003G213400 Sobic003G213400 Sobic002G198100--Sobic003G213400 Sobic007G172700 Sobic007G172700 Sobic009G116900--Sobic007G172700 Sobic009G116900--Sobic003G235100 Sobic001G257800 Sobic001G257800 Sobic009G116900--Sobic001G257800 Sobic006G250800 Sobic006G250800 Sobic009G116900--Sobic006G250800 Sobic004G350700 Sobic004G350700 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic008G055500 Sobic008G055500 Sobic009G116900--Sobic008G055500 Sobic008G152700 Sobic008G152700 Sobic009G116900--Sobic008G152700 Sobic009G116900--Sobic002G198100 Sobic009G046900 Sobic009G046900 Sobic003G235100--Sobic009G046900 Sobic007G004300 Sobic007G004300 Sobic003G235100--Sobic007G004300 Sobic003G235100--Sobic009G116900 Sobic003G235100--Sobic002G084800 Sobic005G145201 Sobic005G145201 Sobic003G235100--Sobic005G145201 Sobic003G235100--Sobic008G152700 Sobic003G402800 Sobic003G402800 Sobic003G235100--Sobic003G402800 Sobic003G235100--Sobic004G350700 Sobic004G107100 Sobic004G107100 Sobic003G235100--Sobic004G107100 Sobic001G188400 Sobic001G188400 Sobic006G115100--Sobic001G188400 Sobic006G115100--Sobic007G004300 Sobic006G115100--Sobic008G055500 Sobic006G115100--Sobic002G200000 Sobic004G176200 Sobic004G176200 Sobic006G115100--Sobic004G176200 Sobic001G253300 Sobic001G253300 Sobic006G115100--Sobic001G253300 Sobic006G115100--Sobic002G198100 Sobic007G076400 Sobic007G076400 Sobic006G115100--Sobic007G076400 Sobic009G026300 Sobic009G026300 Sobic006G115100--Sobic009G026300 Sobic007G022600--Sobic003G235100 Sobic007G022600--Sobic009G046900 Sobic007G022600--Sobic002G084800 Sobic007G022600--Sobic002G198100 Sobic007G022600--Sobic009G116900 Sobic007G022600--Sobic007G076400 Sobic003G092800 Sobic003G092800 Sobic007G022600--Sobic003G092800 Sobic006G060000 Sobic006G060000 Sobic007G022600--Sobic006G060000 Sobic007G022600--Sobic003G402800 Sobic004G263500 Sobic004G263500 Sobic001G356100--Sobic004G263500 Sobic007G118500 Sobic007G118500 Sobic001G356100--Sobic007G118500 Sobic003G394500 Sobic003G394500 Sobic001G356100--Sobic003G394500 Sobic001G455000 Sobic001G455000 Sobic001G356100--Sobic001G455000 Sobic006G232800 Sobic006G232800 Sobic001G356100--Sobic006G232800 Sobic001G356100--Sobic006G060000 Sobic001G356100--Sobic004G350700 Sobic001G114200 Sobic001G114200 Sobic001G356100--Sobic001G114200 Sobic010G133400 Sobic010G133400 Sobic001G356100--Sobic010G133400 Sobic002G084800--Sobic007G076400 Sobic002G084800--Sobic003G235100 Sobic002G084800--Sobic006G250800 Sobic002G084800--Sobic007G172700 Sobic002G079000 Sobic002G079000 Sobic002G084800--Sobic002G079000 Sobic007G087000 Sobic007G087000 Sobic002G084800--Sobic007G087000 Sobic002G084800--Sobic001G188400 Sobic002G084800--Sobic008G037700 Sobic002G084800--Sobic009G116900 Sobic002G200000--Sobic006G060000 Sobic002G200000--Sobic007G076400 Sobic008G116700 Sobic008G116700 Sobic002G200000--Sobic008G116700 Sobic001G141400 Sobic001G141400 Sobic002G200000--Sobic001G141400 Sobic002G200000--Sobic006G115100 Sobic002G200000--Sobic008G055500 Sobic002G200000--Sobic007G172700 Sobic002G200000--Sobic007G087000 Sobic002G355800 Sobic002G355800 Sobic002G200000--Sobic002G355800 Sobic002G252400 Sobic002G252400 Sobic008G037700--Sobic002G252400 Sobic008G037700--Sobic002G084800 Sobic008G037700--Sobic009G116900 Sobic006G106300 Sobic006G106300 Sobic008G037700--Sobic006G106300 Sobic008G176000 Sobic008G176000 Sobic008G037700--Sobic008G176000 Sobic010G091400 Sobic010G091400 Sobic008G037700--Sobic010G091400 Sobic010G169900 Sobic010G169900 Sobic008G037700--Sobic010G169900 Sobic003G409900 Sobic003G409900 Sobic008G037700--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic008G037700--Sobic003G021600 Sobic003G213400--Sobic003G235100 Sobic003G365100 Sobic003G365100 Sobic003G213400--Sobic003G365100 Sobic008G171400 Sobic008G171400 Sobic003G213400--Sobic008G171400 Sobic003G213400--Sobic002G200000 Sobic003G213400--Sobic007G087000 Sobic003G213400--Sobic002G198100 Sobic003G213400--Sobic002G084800 Sobic006G039400 Sobic006G039400 Sobic003G213400--Sobic006G039400 Sobic003G213400--Sobic001G188400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.