Gene annotation
Transcriptome id Sobic.006G115100.1
Synonym Sb06g019640
Functional annotation expressed protein
UniProt C5YAB2
Pfam PF03647
Panther DB PTHR12668 PTHR12668:SF16
NCBI CDD KOG4267; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G57280 : Transmembrane proteins 14C
RAP-DB (Rice) LOC_Os04g39450.1 : expressed protein
MaizeGDB (Corn) Zm00025a056271 , Zm00025a020104
Brachypodium KQJ83100
Barley HORVU2Hr1G081780.10 , HORVU2Hr1G081780.8 , HORVU2Hr1G081780.9 , HORVU2Hr1G081780.4 , HORVU2Hr1G081780.5 , HORVU2Hr1G081780.6 , HORVU2Hr1G081780.7 , HORVU2Hr1G081780.1 , HORVU2Hr1G081780.2
Wheat TraesCS2A02G331300 , TraesCS2B02G350900 , TraesCS2D02G331600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G115100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
2 Sobic.007G004300 phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed -
3 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
4 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
5 Sobic.004G176200 SacI homology domain containing protein, expressed -
6 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
7 Sobic.002G198100 pentatricopeptide, putative, expressed -
8 Sobic.007G076400 expressed protein -
9 Sobic.009G026300 expressed protein K17815: exonuclease V
10 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
11 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
12 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
13 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
14 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
15 Sobic.004G350700 kelch repeat protein, putative, expressed -
16 Sobic.003G058500 expressed protein -
17 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
18 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
19 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
20 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -


Gene co-expression network
sample Sobic006G115100 Sobic006G115100 Sobic001G188400 Sobic001G188400 Sobic006G115100--Sobic001G188400 Sobic007G004300 Sobic007G004300 Sobic006G115100--Sobic007G004300 Sobic008G055500 Sobic008G055500 Sobic006G115100--Sobic008G055500 Sobic002G200000 Sobic002G200000 Sobic006G115100--Sobic002G200000 Sobic004G176200 Sobic004G176200 Sobic006G115100--Sobic004G176200 Sobic001G253300 Sobic001G253300 Sobic006G115100--Sobic001G253300 Sobic002G198100 Sobic002G198100 Sobic006G115100--Sobic002G198100 Sobic007G076400 Sobic007G076400 Sobic006G115100--Sobic007G076400 Sobic009G026300 Sobic009G026300 Sobic006G115100--Sobic009G026300 Sobic001G188400--Sobic006G115100 Sobic001G188400--Sobic001G253300 Sobic003G316200 Sobic003G316200 Sobic001G188400--Sobic003G316200 Sobic006G250800 Sobic006G250800 Sobic001G188400--Sobic006G250800 Sobic001G188400--Sobic007G004300 Sobic002G079000 Sobic002G079000 Sobic001G188400--Sobic002G079000 Sobic002G355800 Sobic002G355800 Sobic001G188400--Sobic002G355800 Sobic002G084800 Sobic002G084800 Sobic001G188400--Sobic002G084800 Sobic001G188400--Sobic008G055500 Sobic007G004300--Sobic004G176200 Sobic007G004300--Sobic006G115100 Sobic002G103800 Sobic002G103800 Sobic007G004300--Sobic002G103800 Sobic003G402800 Sobic003G402800 Sobic007G004300--Sobic003G402800 Sobic007G004300--Sobic008G055500 Sobic003G235100 Sobic003G235100 Sobic007G004300--Sobic003G235100 Sobic003G385300 Sobic003G385300 Sobic007G004300--Sobic003G385300 Sobic009G252200 Sobic009G252200 Sobic007G004300--Sobic009G252200 Sobic002G180800 Sobic002G180800 Sobic007G004300--Sobic002G180800 Sobic008G055500--Sobic003G402800 Sobic006G060000 Sobic006G060000 Sobic008G055500--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic008G055500--Sobic004G350700 Sobic008G055500--Sobic003G385300 Sobic003G117800 Sobic003G117800 Sobic008G055500--Sobic003G117800 Sobic001G257800 Sobic001G257800 Sobic008G055500--Sobic001G257800 Sobic008G152700 Sobic008G152700 Sobic008G055500--Sobic008G152700 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900 Sobic002G200000--Sobic006G060000 Sobic002G200000--Sobic007G076400 Sobic008G116700 Sobic008G116700 Sobic002G200000--Sobic008G116700 Sobic001G141400 Sobic001G141400 Sobic002G200000--Sobic001G141400 Sobic002G200000--Sobic006G115100 Sobic002G200000--Sobic008G055500 Sobic007G172700 Sobic007G172700 Sobic002G200000--Sobic007G172700 Sobic007G087000 Sobic007G087000 Sobic002G200000--Sobic007G087000 Sobic002G200000--Sobic002G355800 Sobic004G176200--Sobic003G385300 Sobic004G176200--Sobic002G103800 Sobic004G176200--Sobic007G004300 Sobic004G077300 Sobic004G077300 Sobic004G176200--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic004G176200--Sobic004G064200 Sobic004G176200--Sobic001G257800 Sobic004G176200--Sobic002G180800 Sobic001G356200 Sobic001G356200 Sobic004G176200--Sobic001G356200 Sobic006G080700 Sobic006G080700 Sobic004G176200--Sobic006G080700 Sobic001G253300--Sobic003G316200 Sobic001G253300--Sobic001G188400 Sobic001G253300--Sobic007G172700 Sobic008G097900 Sobic008G097900 Sobic001G253300--Sobic008G097900 Sobic003G365100 Sobic003G365100 Sobic001G253300--Sobic003G365100 Sobic005G177700 Sobic005G177700 Sobic001G253300--Sobic005G177700 Sobic001G253300--Sobic002G355800 Sobic001G253300--Sobic006G250800 Sobic009G162100 Sobic009G162100 Sobic001G253300--Sobic009G162100 Sobic009G116900 Sobic009G116900 Sobic002G198100--Sobic009G116900 Sobic002G198100--Sobic003G235100 Sobic002G198100--Sobic006G115100 Sobic007G022600 Sobic007G022600 Sobic002G198100--Sobic007G022600 Sobic001G356100 Sobic001G356100 Sobic002G198100--Sobic001G356100 Sobic002G198100--Sobic002G084800 Sobic002G198100--Sobic002G200000 Sobic008G037700 Sobic008G037700 Sobic002G198100--Sobic008G037700 Sobic003G213400 Sobic003G213400 Sobic002G198100--Sobic003G213400 Sobic007G076400--Sobic002G084800 Sobic007G076400--Sobic002G200000 Sobic007G076400--Sobic007G087000 Sobic007G076400--Sobic002G079000 Sobic007G076400--Sobic008G116700 Sobic007G076400--Sobic006G250800 Sobic007G076400--Sobic006G060000 Sobic007G076400--Sobic001G188400 Sobic007G076400--Sobic006G115100 Sobic009G026300--Sobic008G055500 Sobic009G026300--Sobic006G115100 Sobic009G026300--Sobic002G200000 Sobic003G092800 Sobic003G092800 Sobic009G026300--Sobic003G092800 Sobic009G026300--Sobic006G060000 Sobic009G026300--Sobic001G188400 Sobic009G026300--Sobic001G253300 Sobic009G026300--Sobic007G076400 Sobic009G026300--Sobic008G152700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.