Gene annotation
Transcriptome id Sobic.009G217400.2,Sobic.009G217400.1,Sobic.009G217400.3
Synonym Sb09g027250
Functional annotation regulator of chromosome condensation, putative, expressed
UniProt A0A1Z5R4K8 , C5YUX6
Pfam PF13713 PF01363 PF08381 PF00415 PF01363 PF00415
Panther DB PTHR22870 PTHR22870:SF87
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14368 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os05g46740.2,LOC_Os05g46740.1 : regulator of chromosome condensation, putative, expressed
MaizeGDB (Corn) Zm00025a044431 , Zm00025a038909
Brachypodium KQK05077
Barley HORVU1Hr1G078890.39 , HORVU1Hr1G078890.19 , HORVU1Hr1G078890.18 , HORVU1Hr1G078890.11 , HORVU1Hr1G078890.17 , HORVU1Hr1G078890.15 , HORVU1Hr1G078890.32 , HORVU1Hr1G078890.9 , HORVU1Hr1G078890.3 , HORVU1Hr1G078890.2 , HORVU1Hr1G078890.1 , HORVU1Hr1G078890.7 , HORVU1Hr1G078890.5 , HORVU1Hr1G078890.4 , HORVU1Hr1G078890.40 , HORVU1Hr1G078890.20 , HORVU1Hr1G078890.38 , HORVU1Hr1G078890.35 , HORVU1Hr1G078890.34 , HORVU1Hr1G078890.37 , HORVU1Hr1G078890.36 , HORVU1Hr1G078890.31 , HORVU1Hr1G078890.30 , HORVU1Hr1G078890.33 , HORVU1Hr1G078890.13 , HORVU1Hr1G078890.12 , HORVU1Hr1G078890.10 , HORVU1Hr1G078890.16 , HORVU1Hr1G078890.8 , HORVU1Hr1G078890.14 , HORVU1Hr1G078890.6 , HORVU1Hr1G078890.22 , HORVU1Hr1G078890.23 , HORVU1Hr1G078890.21 , HORVU1Hr1G078890.26 , HORVU1Hr1G078890.27 , HORVU1Hr1G078890.24 , HORVU1Hr1G078890.25 , HORVU1Hr1G078890.28 , HORVU1Hr1G078890.29
Wheat TraesCS1A02G366800 , TraesCS1B02G384600 , TraesCS1D02G372300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G182000 hydroxymethylglutaryl-CoA synthase("PubMedID : 26759170,PubMedID : 24597475")@hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
2 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
4 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
5 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
6 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
7 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
8 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
9 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
10 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
11 Sobic.003G243800 - -
12 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
13 Sobic.006G270000 expressed protein -
14 Sobic.006G115100 expressed protein -
15 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
16 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
17 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
18 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -
19 Sobic.002G057400 expressed protein K16586: HAUS augmin-like complex subunit 3
20 Sobic.002G084800 expressed protein -


Gene co-expression network
sample Sobic009G217400 Sobic009G217400 Sobic007G182000 Sobic007G182000 Sobic009G217400--Sobic007G182000 Sobic006G250800 Sobic006G250800 Sobic009G217400--Sobic006G250800 Sobic002G307800 Sobic002G307800 Sobic009G217400--Sobic002G307800 Sobic003G433400 Sobic003G433400 Sobic009G217400--Sobic003G433400 Sobic009G116900 Sobic009G116900 Sobic009G217400--Sobic009G116900 Sobic003G092800 Sobic003G092800 Sobic009G217400--Sobic003G092800 Sobic001G253300 Sobic001G253300 Sobic009G217400--Sobic001G253300 Sobic001G257800 Sobic001G257800 Sobic009G217400--Sobic001G257800 Sobic002G180800 Sobic002G180800 Sobic009G217400--Sobic002G180800 Sobic007G182000--Sobic009G217400 Sobic003G365100 Sobic003G365100 Sobic007G182000--Sobic003G365100 Sobic007G182000--Sobic001G253300 Sobic007G182000--Sobic006G250800 Sobic007G087000 Sobic007G087000 Sobic007G182000--Sobic007G087000 Sobic002G057400 Sobic002G057400 Sobic007G182000--Sobic002G057400 Sobic007G182000--Sobic003G433400 Sobic003G243800 Sobic003G243800 Sobic007G182000--Sobic003G243800 Sobic007G182000--Sobic001G257800 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic001G188400 Sobic001G188400 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic006G250800--Sobic007G087000 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100 Sobic002G307800--Sobic009G217400 Sobic002G307800--Sobic006G250800 Sobic002G310900 Sobic002G310900 Sobic002G307800--Sobic002G310900 Sobic003G403300 Sobic003G403300 Sobic002G307800--Sobic003G403300 Sobic003G010800 Sobic003G010800 Sobic002G307800--Sobic003G010800 Sobic003G198900 Sobic003G198900 Sobic002G307800--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic002G307800--Sobic004G302800 Sobic010G007300 Sobic010G007300 Sobic002G307800--Sobic010G007300 Sobic002G307800--Sobic003G433400 Sobic006G270000 Sobic006G270000 Sobic003G433400--Sobic006G270000 Sobic003G433400--Sobic009G217400 Sobic003G433400--Sobic003G010800 Sobic003G291800 Sobic003G291800 Sobic003G433400--Sobic003G291800 Sobic005G048500 Sobic005G048500 Sobic003G433400--Sobic005G048500 Sobic003G235100 Sobic003G235100 Sobic003G433400--Sobic003G235100 Sobic003G433400--Sobic003G092800 Sobic002G069000 Sobic002G069000 Sobic003G433400--Sobic002G069000 Sobic003G433400--Sobic002G084800 Sobic007G172700 Sobic007G172700 Sobic009G116900--Sobic007G172700 Sobic009G116900--Sobic003G235100 Sobic009G116900--Sobic001G257800 Sobic009G116900--Sobic006G250800 Sobic004G350700 Sobic004G350700 Sobic009G116900--Sobic004G350700 Sobic001G404900 Sobic001G404900 Sobic009G116900--Sobic001G404900 Sobic008G055500 Sobic008G055500 Sobic009G116900--Sobic008G055500 Sobic008G152700 Sobic008G152700 Sobic009G116900--Sobic008G152700 Sobic002G198100 Sobic002G198100 Sobic009G116900--Sobic002G198100 Sobic003G092800--Sobic009G217400 Sobic003G092800--Sobic003G433400 Sobic003G092800--Sobic002G084800 Sobic008G069300 Sobic008G069300 Sobic003G092800--Sobic008G069300 Sobic007G022600 Sobic007G022600 Sobic003G092800--Sobic007G022600 Sobic003G092800--Sobic003G291800 Sobic009G026300 Sobic009G026300 Sobic003G092800--Sobic009G026300 Sobic007G076400 Sobic007G076400 Sobic003G092800--Sobic007G076400 Sobic003G092800--Sobic006G250800 Sobic001G253300--Sobic003G316200 Sobic001G253300--Sobic001G188400 Sobic001G253300--Sobic007G172700 Sobic008G097900 Sobic008G097900 Sobic001G253300--Sobic008G097900 Sobic001G253300--Sobic003G365100 Sobic005G177700 Sobic005G177700 Sobic001G253300--Sobic005G177700 Sobic002G355800 Sobic002G355800 Sobic001G253300--Sobic002G355800 Sobic001G253300--Sobic006G250800 Sobic009G162100 Sobic009G162100 Sobic001G253300--Sobic009G162100 Sobic003G402800 Sobic003G402800 Sobic001G257800--Sobic003G402800 Sobic003G385300 Sobic003G385300 Sobic001G257800--Sobic003G385300 Sobic010G134650 Sobic010G134650 Sobic001G257800--Sobic010G134650 Sobic004G064200 Sobic004G064200 Sobic001G257800--Sobic004G064200 Sobic010G024400 Sobic010G024400 Sobic001G257800--Sobic010G024400 Sobic004G176200 Sobic004G176200 Sobic001G257800--Sobic004G176200 Sobic002G074800 Sobic002G074800 Sobic001G257800--Sobic002G074800 Sobic004G261700 Sobic004G261700 Sobic001G257800--Sobic004G261700 Sobic001G257800--Sobic008G152700 Sobic002G180800--Sobic004G064200 Sobic006G080700 Sobic006G080700 Sobic002G180800--Sobic006G080700 Sobic010G114200 Sobic010G114200 Sobic002G180800--Sobic010G114200 Sobic008G054200 Sobic008G054200 Sobic002G180800--Sobic008G054200 Sobic002G180800--Sobic002G074800 Sobic009G007300 Sobic009G007300 Sobic002G180800--Sobic009G007300 Sobic003G014200 Sobic003G014200 Sobic002G180800--Sobic003G014200 Sobic002G103800 Sobic002G103800 Sobic002G180800--Sobic002G103800 Sobic003G024400 Sobic003G024400 Sobic002G180800--Sobic003G024400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.