Gene annotation
Transcriptome id Sobic.002G307800.1
Synonym EDA18, Sb02g033780
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5X962
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF103
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K01931; protein neuralized
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27950 : Ring/U-Box superfamily protein
RAP-DB (Rice) LOC_Os07g31650.1 : expressed protein
MaizeGDB (Corn) Zm00025a048100 , Zm00025a014701
Brachypodium PNT75042 , PNT75043 , PNT75044
Barley HORVU2Hr1G048520.7 , HORVU2Hr1G048520.6 , HORVU2Hr1G048520.5 , HORVU2Hr1G048520.4 , HORVU2Hr1G048520.3 , HORVU2Hr1G048520.2 , HORVU2Hr1G048520.1 , HORVU2Hr1G048520.9 , HORVU2Hr1G048520.8 , HORVU2Hr1G048520.19 , HORVU2Hr1G048520.18 , HORVU2Hr1G048520.16 , HORVU2Hr1G048520.15 , HORVU2Hr1G048520.14 , HORVU2Hr1G048520.13 , HORVU2Hr1G048520.12 , HORVU2Hr1G048520.11 , HORVU2Hr1G048520.10 , HORVU2Hr1G048520.17
Wheat TraesCS2D02G233500 , TraesCS2D02G233500 , TraesCS2D02G233500 , TraesCS2A02G229600 , TraesCS2A02G229600 , TraesCS2B02G251300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
2 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
4 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
5 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
6 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
7 Sobic.004G302800 MSP domain containing protein, expressed -
8 Sobic.010G007300 hydrolase activity(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase activity(PubMedID : 24655390)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
9 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
10 Sobic.006G270000 expressed protein -
11 Sobic.003G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cation efflux family protein, putative, expressed -
12 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
13 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
14 Sobic.007G182000 hydroxymethylglutaryl-CoA synthase("PubMedID : 26759170,PubMedID : 24597475")@hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
15 Sobic.002G084800 expressed protein -
16 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
17 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
18 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
19 Sobic.004G069000 expressed protein -
20 Sobic.004G213300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic002G307800 Sobic002G307800 Sobic009G217400 Sobic009G217400 Sobic002G307800--Sobic009G217400 Sobic006G250800 Sobic006G250800 Sobic002G307800--Sobic006G250800 Sobic002G310900 Sobic002G310900 Sobic002G307800--Sobic002G310900 Sobic003G403300 Sobic003G403300 Sobic002G307800--Sobic003G403300 Sobic003G010800 Sobic003G010800 Sobic002G307800--Sobic003G010800 Sobic003G198900 Sobic003G198900 Sobic002G307800--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic002G307800--Sobic004G302800 Sobic010G007300 Sobic010G007300 Sobic002G307800--Sobic010G007300 Sobic003G433400 Sobic003G433400 Sobic002G307800--Sobic003G433400 Sobic007G182000 Sobic007G182000 Sobic009G217400--Sobic007G182000 Sobic009G217400--Sobic006G250800 Sobic009G217400--Sobic002G307800 Sobic009G217400--Sobic003G433400 Sobic009G116900 Sobic009G116900 Sobic009G217400--Sobic009G116900 Sobic003G092800 Sobic003G092800 Sobic009G217400--Sobic003G092800 Sobic001G253300 Sobic001G253300 Sobic009G217400--Sobic001G253300 Sobic001G257800 Sobic001G257800 Sobic009G217400--Sobic001G257800 Sobic002G180800 Sobic002G180800 Sobic009G217400--Sobic002G180800 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic001G188400 Sobic001G188400 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic007G087000 Sobic007G087000 Sobic006G250800--Sobic007G087000 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100 Sobic002G310900--Sobic003G010800 Sobic002G310900--Sobic003G403300 Sobic002G310900--Sobic002G307800 Sobic010G134000 Sobic010G134000 Sobic002G310900--Sobic010G134000 Sobic006G270000 Sobic006G270000 Sobic002G310900--Sobic006G270000 Sobic003G027500 Sobic003G027500 Sobic002G310900--Sobic003G027500 Sobic002G407000 Sobic002G407000 Sobic002G310900--Sobic002G407000 Sobic010G165000 Sobic010G165000 Sobic002G310900--Sobic010G165000 Sobic002G310900--Sobic003G433400 Sobic003G403300--Sobic002G310900 Sobic003G403300--Sobic003G010800 Sobic003G403300--Sobic002G307800 Sobic002G098900 Sobic002G098900 Sobic003G403300--Sobic002G098900 Sobic003G403300--Sobic002G407000 Sobic003G403300--Sobic010G134000 Sobic001G067700 Sobic001G067700 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G403300--Sobic003G198900 Sobic003G010800--Sobic010G134000 Sobic003G010800--Sobic006G270000 Sobic003G010800--Sobic002G310900 Sobic003G010800--Sobic003G433400 Sobic003G010800--Sobic003G403300 Sobic010G149800 Sobic010G149800 Sobic003G010800--Sobic010G149800 Sobic010G105000 Sobic010G105000 Sobic003G010800--Sobic010G105000 Sobic003G291800 Sobic003G291800 Sobic003G010800--Sobic003G291800 Sobic003G010800--Sobic002G307800 Sobic003G250400 Sobic003G250400 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic003G198900--Sobic006G270000 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic008G069300 Sobic008G069300 Sobic003G198900--Sobic008G069300 Sobic004G213300 Sobic004G213300 Sobic003G198900--Sobic004G213300 Sobic004G302800--Sobic003G198900 Sobic004G302800--Sobic003G250400 Sobic001G475300 Sobic001G475300 Sobic004G302800--Sobic001G475300 Sobic004G302800--Sobic004G213300 Sobic004G302800--Sobic001G257800 Sobic003G402800 Sobic003G402800 Sobic004G302800--Sobic003G402800 Sobic003G405600 Sobic003G405600 Sobic004G302800--Sobic003G405600 Sobic008G055500 Sobic008G055500 Sobic004G302800--Sobic008G055500 Sobic001G141400 Sobic001G141400 Sobic004G302800--Sobic001G141400 Sobic004G285700 Sobic004G285700 Sobic010G007300--Sobic004G285700 Sobic010G007300--Sobic002G307800 Sobic010G007300--Sobic002G310900 Sobic010G007300--Sobic003G403300 Sobic010G007300--Sobic006G250800 Sobic010G225801 Sobic010G225801 Sobic010G007300--Sobic010G225801 Sobic004G151800 Sobic004G151800 Sobic010G007300--Sobic004G151800 Sobic003G150500 Sobic003G150500 Sobic010G007300--Sobic003G150500 Sobic002G252300 Sobic002G252300 Sobic010G007300--Sobic002G252300 Sobic003G433400--Sobic006G270000 Sobic003G433400--Sobic009G217400 Sobic003G433400--Sobic003G010800 Sobic003G433400--Sobic003G291800 Sobic005G048500 Sobic005G048500 Sobic003G433400--Sobic005G048500 Sobic003G235100 Sobic003G235100 Sobic003G433400--Sobic003G235100 Sobic003G433400--Sobic003G092800 Sobic003G433400--Sobic002G069000 Sobic003G433400--Sobic002G084800
Octagon: transcription factors


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