Gene annotation
Transcriptome id Sobic.004G213300.1
Synonym Sb04g025880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
EF hand family protein, putative, expressed
UniProt C5XXL9
Pfam PF13405 PF13202 PF13833
Panther DB PTHR12294 PTHR12294:SF11
NCBI CDD KOG2643; Ca2+ binding protein, contains EF-hand motifs
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G32060 : calcium-binding EF hand family protein
RAP-DB (Rice) LOC_Os02g39950.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021182 , Zm00025a031943
Brachypodium KQK00313
Barley HORVU6Hr1G056720.10 , HORVU6Hr1G056720.12 , HORVU6Hr1G056720.6 , HORVU6Hr1G056720.7 , HORVU6Hr1G056720.4 , HORVU6Hr1G056720.2 , HORVU6Hr1G056720.3 , HORVU6Hr1G056720.8
Wheat TraesCS6D02G204000 , TraesCS6A02G231100 , TraesCS6B02G250200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
2 Sobic.004G302800 MSP domain containing protein, expressed -
3 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
4 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.003G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX5 - F-box domain containing protein, expressed -
6 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
7 Sobic.003G243800 - -
8 Sobic.007G172700 ECT5, putative, expressed -
9 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
10 Sobic.008G116700 expressed protein -
11 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
12 Sobic.003G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cation efflux family protein, putative, expressed -
13 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
15 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
16 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
17 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
18 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
19 Sobic.002G016200 STE_MEKK_ste11_MAP3K.20 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G213300 Sobic004G213300 Sobic003G198900 Sobic003G198900 Sobic004G213300--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic004G213300--Sobic004G302800 Sobic001G475300 Sobic001G475300 Sobic004G213300--Sobic001G475300 Sobic003G250400 Sobic003G250400 Sobic004G213300--Sobic003G250400 Sobic003G134300 Sobic003G134300 Sobic004G213300--Sobic003G134300 Sobic004G198600 Sobic004G198600 Sobic004G213300--Sobic004G198600 Sobic003G243800 Sobic003G243800 Sobic004G213300--Sobic003G243800 Sobic007G172700 Sobic007G172700 Sobic004G213300--Sobic007G172700 Sobic008G055500 Sobic008G055500 Sobic004G213300--Sobic008G055500 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic006G270000 Sobic006G270000 Sobic003G198900--Sobic006G270000 Sobic001G257800 Sobic001G257800 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic008G069300 Sobic008G069300 Sobic003G198900--Sobic008G069300 Sobic003G198900--Sobic004G213300 Sobic004G302800--Sobic003G198900 Sobic004G302800--Sobic003G250400 Sobic004G302800--Sobic001G475300 Sobic004G302800--Sobic004G213300 Sobic004G302800--Sobic001G257800 Sobic003G402800 Sobic003G402800 Sobic004G302800--Sobic003G402800 Sobic003G405600 Sobic003G405600 Sobic004G302800--Sobic003G405600 Sobic004G302800--Sobic008G055500 Sobic001G141400 Sobic001G141400 Sobic004G302800--Sobic001G141400 Sobic001G475300--Sobic003G250400 Sobic010G181600 Sobic010G181600 Sobic001G475300--Sobic010G181600 Sobic001G475300--Sobic001G141400 Sobic003G117800 Sobic003G117800 Sobic001G475300--Sobic003G117800 Sobic001G475300--Sobic007G172700 Sobic002G355800 Sobic002G355800 Sobic001G475300--Sobic002G355800 Sobic003G058500 Sobic003G058500 Sobic001G475300--Sobic003G058500 Sobic008G152700 Sobic008G152700 Sobic001G475300--Sobic008G152700 Sobic001G475300--Sobic004G302800 Sobic003G250400--Sobic001G475300 Sobic003G250400--Sobic003G198900 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic003G250400--Sobic010G181600 Sobic003G250400--Sobic003G117800 Sobic003G250400--Sobic001G141400 Sobic003G134300--Sobic004G302800 Sobic003G134300--Sobic004G213300 Sobic003G134300--Sobic003G198900 Sobic002G098900 Sobic002G098900 Sobic003G134300--Sobic002G098900 Sobic003G134300--Sobic003G250400 Sobic003G403300 Sobic003G403300 Sobic003G134300--Sobic003G403300 Sobic002G307800 Sobic002G307800 Sobic003G134300--Sobic002G307800 Sobic002G376600 Sobic002G376600 Sobic003G134300--Sobic002G376600 Sobic003G086300 Sobic003G086300 Sobic003G134300--Sobic003G086300 Sobic002G079000 Sobic002G079000 Sobic004G198600--Sobic002G079000 Sobic004G240400 Sobic004G240400 Sobic004G198600--Sobic004G240400 Sobic010G068700 Sobic010G068700 Sobic004G198600--Sobic010G068700 Sobic007G087000 Sobic007G087000 Sobic004G198600--Sobic007G087000 Sobic009G107300 Sobic009G107300 Sobic004G198600--Sobic009G107300 Sobic001G014200 Sobic001G014200 Sobic004G198600--Sobic001G014200 Sobic004G198600--Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic004G198600--Sobic010G169900 Sobic008G116700 Sobic008G116700 Sobic004G198600--Sobic008G116700 Sobic001G376200 Sobic001G376200 Sobic003G243800--Sobic001G376200 Sobic003G243800--Sobic003G086300 Sobic009G217400 Sobic009G217400 Sobic003G243800--Sobic009G217400 Sobic001G332700 Sobic001G332700 Sobic003G243800--Sobic001G332700 Sobic010G218000 Sobic010G218000 Sobic003G243800--Sobic010G218000 Sobic003G243800--Sobic001G141400 Sobic003G039900 Sobic003G039900 Sobic003G243800--Sobic003G039900 Sobic001G253300 Sobic001G253300 Sobic003G243800--Sobic001G253300 Sobic007G182000 Sobic007G182000 Sobic003G243800--Sobic007G182000 Sobic006G060000 Sobic006G060000 Sobic007G172700--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic003G190200 Sobic003G190200 Sobic007G172700--Sobic003G190200 Sobic003G394500 Sobic003G394500 Sobic007G172700--Sobic003G394500 Sobic007G172700--Sobic003G058500 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic008G055500--Sobic004G350700 Sobic003G385300 Sobic003G385300 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic008G055500--Sobic001G257800 Sobic008G055500--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900
Octagon: transcription factors


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