Gene annotation
Transcriptome id Sobic.003G086300.1,Sobic.003G086300.2
Synonym Sb03g007250
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
cation efflux family protein, putative, expressed
UniProt A0A1B6Q289 , A0A1B6Q220
Pfam PF16916 PF01545
Panther DB PTHR11562 PTHR11562:SF20
NCBI CDD KOG1485; Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT1G16310 : Cation efflux family protein
RAP-DB (Rice) LOC_Os01g03914.2,LOC_Os01g03914.1 : cation efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a026944 , Zm00025a023625
Brachypodium KQK02528 , KQK02527 , PNT69875
Barley -
Wheat TraesCS3D02G349500 , TraesCS3D02G038000 , TraesCS3D02G038000 , TraesCS3D02G038000 , TraesCS3B02G388400 , TraesCS3A02G042600 , TraesCS3A02G042600 , TraesCS3A02G042600 , TraesCS3A02G355500 , TraesCS3A02G355500 , TraesCS3B02G040900 , TraesCS3B02G040900 , TraesCS3B02G040900
Populus -


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cDNA sequences
Sobic.003G086300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G243800 - -
2 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
3 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
4 Sobic.004G213300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
5 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.007G182000 hydroxymethylglutaryl-CoA synthase("PubMedID : 26759170,PubMedID : 24597475")@hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
7 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
8 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
9 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
11 Sobic.004G302800 MSP domain containing protein, expressed -
12 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
13 Sobic.001G087000 OsTOP6A1 - Topoisomerase 6 subunit A homolog 1, expressed K10878: meiotic recombination protein SPO11
14 Sobic.010G218000 rabGAP/TBC domain-containing protein, putative, expressed K18469: TBC1 domain family member 5
15 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -
16 Sobic.003G316200 transmembrane protein 49, putative, expressed -
17 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
18 Sobic.003G329900 FAD dependent oxidoreductase domain containing protein, expressed -
19 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
20 Sobic.006G132600 - -


Gene co-expression network
sample Sobic003G086300 Sobic003G086300 Sobic003G243800 Sobic003G243800 Sobic003G086300--Sobic003G243800 Sobic009G217400 Sobic009G217400 Sobic003G086300--Sobic009G217400 Sobic001G253300 Sobic001G253300 Sobic003G086300--Sobic001G253300 Sobic004G213300 Sobic004G213300 Sobic003G086300--Sobic004G213300 Sobic003G250400 Sobic003G250400 Sobic003G086300--Sobic003G250400 Sobic007G182000 Sobic007G182000 Sobic003G086300--Sobic007G182000 Sobic002G307800 Sobic002G307800 Sobic003G086300--Sobic002G307800 Sobic001G475300 Sobic001G475300 Sobic003G086300--Sobic001G475300 Sobic006G250800 Sobic006G250800 Sobic003G086300--Sobic006G250800 Sobic001G376200 Sobic001G376200 Sobic003G243800--Sobic001G376200 Sobic003G243800--Sobic003G086300 Sobic003G243800--Sobic009G217400 Sobic001G332700 Sobic001G332700 Sobic003G243800--Sobic001G332700 Sobic010G218000 Sobic010G218000 Sobic003G243800--Sobic010G218000 Sobic001G141400 Sobic001G141400 Sobic003G243800--Sobic001G141400 Sobic003G039900 Sobic003G039900 Sobic003G243800--Sobic003G039900 Sobic003G243800--Sobic001G253300 Sobic003G243800--Sobic007G182000 Sobic009G217400--Sobic007G182000 Sobic009G217400--Sobic006G250800 Sobic009G217400--Sobic002G307800 Sobic003G433400 Sobic003G433400 Sobic009G217400--Sobic003G433400 Sobic009G116900 Sobic009G116900 Sobic009G217400--Sobic009G116900 Sobic003G092800 Sobic003G092800 Sobic009G217400--Sobic003G092800 Sobic009G217400--Sobic001G253300 Sobic001G257800 Sobic001G257800 Sobic009G217400--Sobic001G257800 Sobic002G180800 Sobic002G180800 Sobic009G217400--Sobic002G180800 Sobic003G316200 Sobic003G316200 Sobic001G253300--Sobic003G316200 Sobic001G188400 Sobic001G188400 Sobic001G253300--Sobic001G188400 Sobic007G172700 Sobic007G172700 Sobic001G253300--Sobic007G172700 Sobic008G097900 Sobic008G097900 Sobic001G253300--Sobic008G097900 Sobic003G365100 Sobic003G365100 Sobic001G253300--Sobic003G365100 Sobic005G177700 Sobic005G177700 Sobic001G253300--Sobic005G177700 Sobic002G355800 Sobic002G355800 Sobic001G253300--Sobic002G355800 Sobic001G253300--Sobic006G250800 Sobic009G162100 Sobic009G162100 Sobic001G253300--Sobic009G162100 Sobic003G198900 Sobic003G198900 Sobic004G213300--Sobic003G198900 Sobic004G302800 Sobic004G302800 Sobic004G213300--Sobic004G302800 Sobic004G213300--Sobic001G475300 Sobic004G213300--Sobic003G250400 Sobic003G134300 Sobic003G134300 Sobic004G213300--Sobic003G134300 Sobic004G198600 Sobic004G198600 Sobic004G213300--Sobic004G198600 Sobic004G213300--Sobic003G243800 Sobic004G213300--Sobic007G172700 Sobic008G055500 Sobic008G055500 Sobic004G213300--Sobic008G055500 Sobic003G250400--Sobic001G475300 Sobic003G250400--Sobic003G198900 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic010G181600 Sobic010G181600 Sobic003G250400--Sobic010G181600 Sobic003G117800 Sobic003G117800 Sobic003G250400--Sobic003G117800 Sobic003G250400--Sobic001G141400 Sobic007G182000--Sobic009G217400 Sobic007G182000--Sobic003G365100 Sobic007G182000--Sobic001G253300 Sobic007G182000--Sobic006G250800 Sobic007G087000 Sobic007G087000 Sobic007G182000--Sobic007G087000 Sobic002G057400 Sobic002G057400 Sobic007G182000--Sobic002G057400 Sobic007G182000--Sobic003G433400 Sobic007G182000--Sobic003G243800 Sobic007G182000--Sobic001G257800 Sobic002G307800--Sobic009G217400 Sobic002G307800--Sobic006G250800 Sobic002G310900 Sobic002G310900 Sobic002G307800--Sobic002G310900 Sobic003G403300 Sobic003G403300 Sobic002G307800--Sobic003G403300 Sobic003G010800 Sobic003G010800 Sobic002G307800--Sobic003G010800 Sobic002G307800--Sobic003G198900 Sobic002G307800--Sobic004G302800 Sobic010G007300 Sobic010G007300 Sobic002G307800--Sobic010G007300 Sobic002G307800--Sobic003G433400 Sobic001G475300--Sobic003G250400 Sobic001G475300--Sobic010G181600 Sobic001G475300--Sobic001G141400 Sobic001G475300--Sobic003G117800 Sobic001G475300--Sobic007G172700 Sobic001G475300--Sobic002G355800 Sobic003G058500 Sobic003G058500 Sobic001G475300--Sobic003G058500 Sobic008G152700 Sobic008G152700 Sobic001G475300--Sobic008G152700 Sobic001G475300--Sobic004G302800 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic006G250800--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic006G250800--Sobic007G087000 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100
Octagon: transcription factors


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