Gene annotation
Transcriptome id Sobic.007G182000.1
Synonym HMGS, Sb07g025240, EMB2778, MVA1, FKP1
Functional annotation hydroxymethylglutaryl-CoA synthase( (PubMedID : 26759170,(PubMedID : 24597475)
hydroxymethylglutaryl-CoA synthase, putative, expressed
UniProt C5YH72
Pfam PF01154 PF08540
Panther DB PTHR11877 PTHR11877:SF18
NCBI CDD -
KEGG Orthology K01641; hydroxymethylglutaryl-CoA synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process GO:0004421hydroxymethylglutaryl-CoA synthase activity


Orthologs (automatic annotation)
TAIR AT4G11820 : hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
RAP-DB (Rice) LOC_Os08g43170.1 : hydroxymethylglutaryl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a047699 , Zm00025a014379
Brachypodium KQJ99251 , KQJ99250
Barley HORVU7Hr1G056590.10 , HORVU7Hr1G056590.8 , HORVU7Hr1G056590.9 , HORVU7Hr1G056590.1 , HORVU7Hr1G056590.2 , HORVU7Hr1G056590.3 , HORVU7Hr1G056590.4 , HORVU7Hr1G056590.5 , HORVU7Hr1G056590.6 , HORVU7Hr1G056590.7
Wheat TraesCS7B02G167300 , TraesCS7B02G167300 , TraesCS7B02G167300 , TraesCS7A02G269100 , TraesCS7A02G269100 , TraesCS7D02G269600 , TraesCS7D02G269600
Populus -


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cDNA sequences
Sobic.007G182000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
2 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -
3 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
4 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
5 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
6 Sobic.002G057400 expressed protein K16586: HAUS augmin-like complex subunit 3
7 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
8 Sobic.003G243800 - -
9 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
10 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
11 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
12 Sobic.003G213400 expressed protein -
13 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
14 Sobic.006G115100 expressed protein -
15 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
16 Sobic.007G004300 phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed -
17 Sobic.003G316200 transmembrane protein 49, putative, expressed -
18 Sobic.002G200000 zinc finger, C3HC4 type, putative, expressed -
19 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
20 Sobic.004G176200 SacI homology domain containing protein, expressed -


Gene co-expression network
sample Sobic007G182000 Sobic007G182000 Sobic009G217400 Sobic009G217400 Sobic007G182000--Sobic009G217400 Sobic003G365100 Sobic003G365100 Sobic007G182000--Sobic003G365100 Sobic001G253300 Sobic001G253300 Sobic007G182000--Sobic001G253300 Sobic006G250800 Sobic006G250800 Sobic007G182000--Sobic006G250800 Sobic007G087000 Sobic007G087000 Sobic007G182000--Sobic007G087000 Sobic002G057400 Sobic002G057400 Sobic007G182000--Sobic002G057400 Sobic003G433400 Sobic003G433400 Sobic007G182000--Sobic003G433400 Sobic003G243800 Sobic003G243800 Sobic007G182000--Sobic003G243800 Sobic001G257800 Sobic001G257800 Sobic007G182000--Sobic001G257800 Sobic009G217400--Sobic007G182000 Sobic009G217400--Sobic006G250800 Sobic002G307800 Sobic002G307800 Sobic009G217400--Sobic002G307800 Sobic009G217400--Sobic003G433400 Sobic009G116900 Sobic009G116900 Sobic009G217400--Sobic009G116900 Sobic003G092800 Sobic003G092800 Sobic009G217400--Sobic003G092800 Sobic009G217400--Sobic001G253300 Sobic009G217400--Sobic001G257800 Sobic002G180800 Sobic002G180800 Sobic009G217400--Sobic002G180800 Sobic003G316200 Sobic003G316200 Sobic003G365100--Sobic003G316200 Sobic002G306100 Sobic002G306100 Sobic003G365100--Sobic002G306100 Sobic003G365100--Sobic001G253300 Sobic005G177700 Sobic005G177700 Sobic003G365100--Sobic005G177700 Sobic003G156400 Sobic003G156400 Sobic003G365100--Sobic003G156400 Sobic003G365100--Sobic007G182000 Sobic003G365100--Sobic006G250800 Sobic001G188400 Sobic001G188400 Sobic003G365100--Sobic001G188400 Sobic005G090300 Sobic005G090300 Sobic003G365100--Sobic005G090300 Sobic001G253300--Sobic003G316200 Sobic001G253300--Sobic001G188400 Sobic007G172700 Sobic007G172700 Sobic001G253300--Sobic007G172700 Sobic008G097900 Sobic008G097900 Sobic001G253300--Sobic008G097900 Sobic001G253300--Sobic003G365100 Sobic001G253300--Sobic005G177700 Sobic002G355800 Sobic002G355800 Sobic001G253300--Sobic002G355800 Sobic001G253300--Sobic006G250800 Sobic009G162100 Sobic009G162100 Sobic001G253300--Sobic009G162100 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic006G250800--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic006G250800--Sobic007G087000 Sobic006G250800--Sobic001G253300 Sobic006G250800--Sobic002G306100 Sobic007G087000--Sobic002G079000 Sobic007G076400 Sobic007G076400 Sobic007G087000--Sobic007G076400 Sobic007G087000--Sobic002G306100 Sobic008G116700 Sobic008G116700 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic001G237600 Sobic001G237600 Sobic007G087000--Sobic001G237600 Sobic007G087000--Sobic007G172700 Sobic009G107300 Sobic009G107300 Sobic007G087000--Sobic009G107300 Sobic003G402800 Sobic003G402800 Sobic002G057400--Sobic003G402800 Sobic002G304700 Sobic002G304700 Sobic002G057400--Sobic002G304700 Sobic005G225100 Sobic005G225100 Sobic002G057400--Sobic005G225100 Sobic003G385300 Sobic003G385300 Sobic002G057400--Sobic003G385300 Sobic010G160300 Sobic010G160300 Sobic002G057400--Sobic010G160300 Sobic008G055500 Sobic008G055500 Sobic002G057400--Sobic008G055500 Sobic002G007800 Sobic002G007800 Sobic002G057400--Sobic002G007800 Sobic005G063200 Sobic005G063200 Sobic002G057400--Sobic005G063200 Sobic001G501900 Sobic001G501900 Sobic002G057400--Sobic001G501900 Sobic006G270000 Sobic006G270000 Sobic003G433400--Sobic006G270000 Sobic003G433400--Sobic009G217400 Sobic003G010800 Sobic003G010800 Sobic003G433400--Sobic003G010800 Sobic003G291800 Sobic003G291800 Sobic003G433400--Sobic003G291800 Sobic005G048500 Sobic005G048500 Sobic003G433400--Sobic005G048500 Sobic003G235100 Sobic003G235100 Sobic003G433400--Sobic003G235100 Sobic003G433400--Sobic003G092800 Sobic002G069000 Sobic002G069000 Sobic003G433400--Sobic002G069000 Sobic003G433400--Sobic002G084800 Sobic001G376200 Sobic001G376200 Sobic003G243800--Sobic001G376200 Sobic003G086300 Sobic003G086300 Sobic003G243800--Sobic003G086300 Sobic003G243800--Sobic009G217400 Sobic001G332700 Sobic001G332700 Sobic003G243800--Sobic001G332700 Sobic010G218000 Sobic010G218000 Sobic003G243800--Sobic010G218000 Sobic001G141400 Sobic001G141400 Sobic003G243800--Sobic001G141400 Sobic003G039900 Sobic003G039900 Sobic003G243800--Sobic003G039900 Sobic003G243800--Sobic001G253300 Sobic003G243800--Sobic007G182000 Sobic001G257800--Sobic003G402800 Sobic001G257800--Sobic003G385300 Sobic010G134650 Sobic010G134650 Sobic001G257800--Sobic010G134650 Sobic004G064200 Sobic004G064200 Sobic001G257800--Sobic004G064200 Sobic010G024400 Sobic010G024400 Sobic001G257800--Sobic010G024400 Sobic004G176200 Sobic004G176200 Sobic001G257800--Sobic004G176200 Sobic002G074800 Sobic002G074800 Sobic001G257800--Sobic002G074800 Sobic004G261700 Sobic004G261700 Sobic001G257800--Sobic004G261700 Sobic008G152700 Sobic008G152700 Sobic001G257800--Sobic008G152700
Octagon: transcription factors


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