Gene annotation
Transcriptome id Sobic.002G200000.3,Sobic.002G200000.1,Sobic.002G200000.4,Sobic.002G200000.2
Synonym Sb02g024570
Functional annotation zinc finger, C3HC4 type, putative, expressed
UniProt A0A1B6QCH5 , A0A1B6QCJ5 , A0A1B6QCH2
Pfam PF12906 PF12428
Panther DB PTHR23012 PTHR23012:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G02960 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os09g24650.3,LOC_Os09g24650.1,LOC_Os09g24650.2 : zinc finger, C3HC4 type, putative, expressed
MaizeGDB (Corn) Zm00025a013925 , Zm00025a020804
Brachypodium KQJ90218 , KQJ90219 , KQJ90216 , KQJ90217 , KQJ90214 , KQJ90215
Barley HORVU3Hr1G029140.1 , HORVU3Hr1G029140.3 , HORVU3Hr1G029140.2 , HORVU5Hr1G066160.3 , HORVU5Hr1G066160.4 , HORVU5Hr1G066160.5 , HORVU5Hr1G066160.6 , HORVU5Hr1G066160.7 , HORVU5Hr1G066160.1 , HORVU5Hr1G066160.2 , HORVU5Hr1G066160.8
Wheat TraesCS5D02G239200 , TraesCS5D02G239200 , TraesCS5A02G228400 , TraesCS5B02G227200
Populus -


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cDNA sequences
Sobic.002G200000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
2 Sobic.007G076400 expressed protein -
3 Sobic.008G116700 expressed protein -
4 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
5 Sobic.006G115100 expressed protein -
6 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
7 Sobic.007G172700 ECT5, putative, expressed -
8 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
9 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
10 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
11 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
12 Sobic.003G058500 expressed protein -
13 Sobic.004G350700 kelch repeat protein, putative, expressed -
14 Sobic.009G162100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
15 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
16 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
17 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
18 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
20 Sobic.004G004100 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G200000 Sobic002G200000 Sobic006G060000 Sobic006G060000 Sobic002G200000--Sobic006G060000 Sobic007G076400 Sobic007G076400 Sobic002G200000--Sobic007G076400 Sobic008G116700 Sobic008G116700 Sobic002G200000--Sobic008G116700 Sobic001G141400 Sobic001G141400 Sobic002G200000--Sobic001G141400 Sobic006G115100 Sobic006G115100 Sobic002G200000--Sobic006G115100 Sobic008G055500 Sobic008G055500 Sobic002G200000--Sobic008G055500 Sobic007G172700 Sobic007G172700 Sobic002G200000--Sobic007G172700 Sobic007G087000 Sobic007G087000 Sobic002G200000--Sobic007G087000 Sobic002G355800 Sobic002G355800 Sobic002G200000--Sobic002G355800 Sobic006G060000--Sobic008G055500 Sobic004G350700 Sobic004G350700 Sobic006G060000--Sobic004G350700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic003G394500 Sobic003G394500 Sobic006G060000--Sobic003G394500 Sobic001G389200 Sobic001G389200 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic003G117800 Sobic003G117800 Sobic006G060000--Sobic003G117800 Sobic001G490900 Sobic001G490900 Sobic006G060000--Sobic001G490900 Sobic002G084800 Sobic002G084800 Sobic007G076400--Sobic002G084800 Sobic007G076400--Sobic002G200000 Sobic007G076400--Sobic007G087000 Sobic002G079000 Sobic002G079000 Sobic007G076400--Sobic002G079000 Sobic007G076400--Sobic008G116700 Sobic006G250800 Sobic006G250800 Sobic007G076400--Sobic006G250800 Sobic007G076400--Sobic006G060000 Sobic001G188400 Sobic001G188400 Sobic007G076400--Sobic001G188400 Sobic007G076400--Sobic006G115100 Sobic008G116700--Sobic007G087000 Sobic008G116700--Sobic002G200000 Sobic008G116700--Sobic001G114200 Sobic008G116700--Sobic002G079000 Sobic002G076500 Sobic002G076500 Sobic008G116700--Sobic002G076500 Sobic009G107300 Sobic009G107300 Sobic008G116700--Sobic009G107300 Sobic008G116700--Sobic007G076400 Sobic008G069300 Sobic008G069300 Sobic008G116700--Sobic008G069300 Sobic004G198600 Sobic004G198600 Sobic008G116700--Sobic004G198600 Sobic001G475300 Sobic001G475300 Sobic001G141400--Sobic001G475300 Sobic009G252300 Sobic009G252300 Sobic001G141400--Sobic009G252300 Sobic003G250400 Sobic003G250400 Sobic001G141400--Sobic003G250400 Sobic009G194000 Sobic009G194000 Sobic001G141400--Sobic009G194000 Sobic003G190200 Sobic003G190200 Sobic001G141400--Sobic003G190200 Sobic001G141400--Sobic007G172700 Sobic001G141400--Sobic001G490900 Sobic001G141400--Sobic002G200000 Sobic003G039900 Sobic003G039900 Sobic001G141400--Sobic003G039900 Sobic006G115100--Sobic001G188400 Sobic007G004300 Sobic007G004300 Sobic006G115100--Sobic007G004300 Sobic006G115100--Sobic008G055500 Sobic006G115100--Sobic002G200000 Sobic004G176200 Sobic004G176200 Sobic006G115100--Sobic004G176200 Sobic001G253300 Sobic001G253300 Sobic006G115100--Sobic001G253300 Sobic002G198100 Sobic002G198100 Sobic006G115100--Sobic002G198100 Sobic006G115100--Sobic007G076400 Sobic009G026300 Sobic009G026300 Sobic006G115100--Sobic009G026300 Sobic003G402800 Sobic003G402800 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic008G055500--Sobic004G350700 Sobic003G385300 Sobic003G385300 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic001G257800 Sobic001G257800 Sobic008G055500--Sobic001G257800 Sobic008G152700 Sobic008G152700 Sobic008G055500--Sobic008G152700 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic007G172700--Sobic003G190200 Sobic007G172700--Sobic003G394500 Sobic003G058500 Sobic003G058500 Sobic007G172700--Sobic003G058500 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic007G087000--Sobic002G079000 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic001G237600 Sobic001G237600 Sobic007G087000--Sobic001G237600 Sobic007G087000--Sobic007G172700 Sobic007G087000--Sobic009G107300 Sobic010G169900 Sobic010G169900 Sobic002G355800--Sobic010G169900 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic002G355800--Sobic001G389200 Sobic002G355800--Sobic001G475300 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700
Octagon: transcription factors


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