Gene annotation
Transcriptome id Sobic.004G004100.1
Synonym Sb04g000550
Functional annotation nucleic acid binding protein, putative, expressed
UniProt C5XRJ3
Pfam PF13893
Panther DB PTHR20957
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27790 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g01480.1 : nucleic acid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a035085
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
2 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
3 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
4 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
5 Sobic.003G428000 expressed protein -
6 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
7 Sobic.003G058500 expressed protein -
8 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.001G149000 FAR1 family protein, expressed -
10 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
11 Sobic.010G255900 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
12 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
14 Sobic.005G185500 - -
15 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
16 Sobic.009G252300 expressed protein -
17 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
18 Sobic.004G350700 kelch repeat protein, putative, expressed -
19 Sobic.004G141400 START domain containing protein, putative, expressed -
20 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic004G004100 Sobic004G004100 Sobic010G181600 Sobic010G181600 Sobic004G004100--Sobic010G181600 Sobic007G077532 Sobic007G077532 Sobic004G004100--Sobic007G077532 Sobic001G356200 Sobic001G356200 Sobic004G004100--Sobic001G356200 Sobic008G152700 Sobic008G152700 Sobic004G004100--Sobic008G152700 Sobic003G428000 Sobic003G428000 Sobic004G004100--Sobic003G428000 Sobic009G046900 Sobic009G046900 Sobic004G004100--Sobic009G046900 Sobic003G058500 Sobic003G058500 Sobic004G004100--Sobic003G058500 Sobic003G117800 Sobic003G117800 Sobic004G004100--Sobic003G117800 Sobic001G149000 Sobic001G149000 Sobic004G004100--Sobic001G149000 Sobic010G181600--Sobic003G058500 Sobic001G424800 Sobic001G424800 Sobic010G181600--Sobic001G424800 Sobic010G181600--Sobic003G117800 Sobic001G475300 Sobic001G475300 Sobic010G181600--Sobic001G475300 Sobic008G006000 Sobic008G006000 Sobic010G181600--Sobic008G006000 Sobic003G353700 Sobic003G353700 Sobic010G181600--Sobic003G353700 Sobic007G218600 Sobic007G218600 Sobic010G181600--Sobic007G218600 Sobic010G181600--Sobic004G004100 Sobic003G250400 Sobic003G250400 Sobic010G181600--Sobic003G250400 Sobic004G141400 Sobic004G141400 Sobic007G077532--Sobic004G141400 Sobic001G057400 Sobic001G057400 Sobic007G077532--Sobic001G057400 Sobic007G192400 Sobic007G192400 Sobic007G077532--Sobic007G192400 Sobic007G077532--Sobic004G004100 Sobic005G185500 Sobic005G185500 Sobic007G077532--Sobic005G185500 Sobic007G077532--Sobic010G181600 Sobic007G077532--Sobic003G353700 Sobic007G077532--Sobic008G006000 Sobic007G077532--Sobic003G117800 Sobic004G113600 Sobic004G113600 Sobic001G356200--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic001G356200--Sobic001G400000 Sobic003G385300 Sobic003G385300 Sobic001G356200--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic001G356200--Sobic007G039200 Sobic001G356200--Sobic001G424800 Sobic004G107100 Sobic004G107100 Sobic001G356200--Sobic004G107100 Sobic003G089100 Sobic003G089100 Sobic001G356200--Sobic003G089100 Sobic001G356200--Sobic003G117800 Sobic006G134500 Sobic006G134500 Sobic001G356200--Sobic006G134500 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic008G152700--Sobic003G117800 Sobic004G077300 Sobic004G077300 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic007G172700 Sobic007G172700 Sobic008G152700--Sobic007G172700 Sobic008G152700--Sobic003G428000 Sobic003G394500 Sobic003G394500 Sobic008G152700--Sobic003G394500 Sobic001G385000 Sobic001G385000 Sobic008G152700--Sobic001G385000 Sobic003G428000--Sobic001G149000 Sobic003G428000--Sobic009G046900 Sobic004G194400 Sobic004G194400 Sobic003G428000--Sobic004G194400 Sobic003G428000--Sobic008G152700 Sobic010G274800 Sobic010G274800 Sobic003G428000--Sobic010G274800 Sobic009G252300 Sobic009G252300 Sobic003G428000--Sobic009G252300 Sobic003G428000--Sobic003G385300 Sobic004G082800 Sobic004G082800 Sobic003G428000--Sobic004G082800 Sobic002G074800 Sobic002G074800 Sobic003G428000--Sobic002G074800 Sobic009G046900--Sobic001G149000 Sobic009G178400 Sobic009G178400 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic009G046900--Sobic006G134500 Sobic009G046900--Sobic002G074800 Sobic009G046900--Sobic003G385300 Sobic001G384200 Sobic001G384200 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600 Sobic003G058500--Sobic001G424800 Sobic003G058500--Sobic010G181600 Sobic003G058500--Sobic007G172700 Sobic001G047600 Sobic001G047600 Sobic003G058500--Sobic001G047600 Sobic004G350700 Sobic004G350700 Sobic003G058500--Sobic004G350700 Sobic002G355800 Sobic002G355800 Sobic003G058500--Sobic002G355800 Sobic001G378800 Sobic001G378800 Sobic003G058500--Sobic001G378800 Sobic003G058500--Sobic008G152700 Sobic003G058500--Sobic003G117800 Sobic003G117800--Sobic001G424800 Sobic003G117800--Sobic003G385300 Sobic003G117800--Sobic003G394500 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic003G117800--Sobic001G356200 Sobic003G117800--Sobic001G385000 Sobic003G117800--Sobic009G046900 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic001G149000--Sobic009G046900 Sobic001G149000--Sobic001G384200 Sobic001G149000--Sobic009G178400 Sobic001G280500 Sobic001G280500 Sobic001G149000--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300
Octagon: transcription factors


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