Gene annotation
Transcriptome id Sobic.004G350700.1
Synonym Sb04g037760
Functional annotation kelch repeat protein, putative, expressed
UniProt A0A1Z5RQD7
Pfam PF01344 PF13418 PF07646
Panther DB PTHR23244 PTHR23244:SF321
NCBI CDD KOG4693; Uncharacterized conserved protein, contains kelch repeat
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G04420 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os02g57690.1 : kelch repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a032754
Brachypodium KQK01468
Barley HORVU6Hr1G093000.16 , HORVU6Hr1G093000.14 , HORVU6Hr1G093000.15 , HORVU6Hr1G093000.12 , HORVU6Hr1G093000.13 , HORVU6Hr1G093000.10 , HORVU6Hr1G093000.11 , HORVU6Hr1G093000.4 , HORVU6Hr1G093000.5 , HORVU6Hr1G093000.2 , HORVU6Hr1G093000.8 , HORVU6Hr1G093000.9 , HORVU6Hr1G093000.6 , HORVU6Hr1G093000.7 , HORVU6Hr1G093000.3 , HORVU6Hr1G093000.1
Wheat TraesCS6B02G450700 , TraesCS6A02G406400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
2 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
3 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
5 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
6 Sobic.001G149000 FAR1 family protein, expressed -
7 Sobic.007G172700 ECT5, putative, expressed -
8 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
9 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
11 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
12 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
13 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
14 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
15 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
16 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
17 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
18 Sobic.003G058500 expressed protein -
19 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
20 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G350700 Sobic004G350700 Sobic008G055500 Sobic008G055500 Sobic004G350700--Sobic008G055500 Sobic003G394500 Sobic003G394500 Sobic004G350700--Sobic003G394500 Sobic003G385300 Sobic003G385300 Sobic004G350700--Sobic003G385300 Sobic001G424800 Sobic001G424800 Sobic004G350700--Sobic001G424800 Sobic006G060000 Sobic006G060000 Sobic004G350700--Sobic006G060000 Sobic001G149000 Sobic001G149000 Sobic004G350700--Sobic001G149000 Sobic007G172700 Sobic007G172700 Sobic004G350700--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic004G350700--Sobic001G114200 Sobic003G117800 Sobic003G117800 Sobic004G350700--Sobic003G117800 Sobic003G402800 Sobic003G402800 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic008G055500--Sobic004G350700 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic001G257800 Sobic001G257800 Sobic008G055500--Sobic001G257800 Sobic008G152700 Sobic008G152700 Sobic008G055500--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900 Sobic003G394500--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic003G394500--Sobic001G385000 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic003G394500--Sobic001G424800 Sobic003G385300--Sobic001G149000 Sobic003G385300--Sobic003G402800 Sobic004G077300 Sobic004G077300 Sobic003G385300--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic003G385300--Sobic004G064200 Sobic003G385300--Sobic004G176200 Sobic003G385300--Sobic001G257800 Sobic005G225500 Sobic005G225500 Sobic003G385300--Sobic005G225500 Sobic007G039200 Sobic007G039200 Sobic003G385300--Sobic007G039200 Sobic002G074800 Sobic002G074800 Sobic003G385300--Sobic002G074800 Sobic001G424800--Sobic003G117800 Sobic003G058500 Sobic003G058500 Sobic001G424800--Sobic003G058500 Sobic001G424800--Sobic004G350700 Sobic001G356200 Sobic001G356200 Sobic001G424800--Sobic001G356200 Sobic001G424800--Sobic001G149000 Sobic001G280500 Sobic001G280500 Sobic001G424800--Sobic001G280500 Sobic001G424800--Sobic003G394500 Sobic001G424800--Sobic003G385300 Sobic001G424800--Sobic001G378800 Sobic006G060000--Sobic008G055500 Sobic006G060000--Sobic004G350700 Sobic006G060000--Sobic007G172700 Sobic006G060000--Sobic001G114200 Sobic006G060000--Sobic003G394500 Sobic001G389200 Sobic001G389200 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic006G060000--Sobic003G117800 Sobic001G490900 Sobic001G490900 Sobic006G060000--Sobic001G490900 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic009G046900 Sobic009G046900 Sobic001G149000--Sobic009G046900 Sobic001G384200 Sobic001G384200 Sobic001G149000--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G149000--Sobic009G178400 Sobic001G149000--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic007G172700--Sobic003G190200 Sobic007G172700--Sobic003G394500 Sobic007G172700--Sobic003G058500 Sobic002G355800 Sobic002G355800 Sobic007G172700--Sobic002G355800 Sobic007G172700--Sobic001G424800 Sobic007G172700--Sobic007G030100 Sobic001G114200--Sobic004G350700 Sobic001G114200--Sobic006G060000 Sobic010G160300 Sobic010G160300 Sobic001G114200--Sobic010G160300 Sobic001G114200--Sobic003G117800 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G114200--Sobic001G490900 Sobic001G114200--Sobic007G030100 Sobic007G218600 Sobic007G218600 Sobic001G114200--Sobic007G218600 Sobic003G117800--Sobic001G424800 Sobic003G117800--Sobic003G385300 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic003G117800--Sobic001G356200 Sobic003G117800--Sobic001G385000 Sobic003G117800--Sobic009G046900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.