Gene annotation
Transcriptome id Sobic.010G160300.1
Synonym CID8, Sb10g021290
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Z446
Pfam PF07145 PF00076
Panther DB PTHR24012
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) KOG0131Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G32790 : CTC-interacting domain 11
RAP-DB (Rice) LOC_Os06g35030.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050962
Brachypodium -
Barley -
Wheat TraesCS7A02G345700 , TraesCS7A02G345700 , TraesCS7D02G333600 , TraesCS7B02G450400 , TraesCS7B02G450400 , TraesCS7B02G237600 , TraesCS7D02G520500 , TraesCS7A02G533200
Populus -


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cDNA sequences
Sobic.010G160300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
2 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
3 Sobic.005G063200 expressed protein -
4 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
5 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
6 Sobic.004G350700 kelch repeat protein, putative, expressed -
7 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
8 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.001G149000 FAR1 family protein, expressed -
10 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
12 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
13 Sobic.001G305900 GTP binding protein, putative, expressed -
14 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
15 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
16 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
17 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
18 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
19 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
20 Sobic.002G377900 mitosis protein dim1, putative, expressed -


Gene co-expression network
sample Sobic010G160300 Sobic010G160300 Sobic002G304700 Sobic002G304700 Sobic010G160300--Sobic002G304700 Sobic001G280500 Sobic001G280500 Sobic010G160300--Sobic001G280500 Sobic005G063200 Sobic005G063200 Sobic010G160300--Sobic005G063200 Sobic001G114200 Sobic001G114200 Sobic010G160300--Sobic001G114200 Sobic001G501900 Sobic001G501900 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic002G007800 Sobic002G007800 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic001G149000 Sobic001G149000 Sobic010G160300--Sobic001G149000 Sobic002G304700--Sobic010G160300 Sobic006G156400 Sobic006G156400 Sobic002G304700--Sobic006G156400 Sobic002G304700--Sobic001G280500 Sobic003G385300 Sobic003G385300 Sobic002G304700--Sobic003G385300 Sobic002G304700--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic002G304700--Sobic004G077300 Sobic002G304700--Sobic002G007800 Sobic009G106700 Sobic009G106700 Sobic002G304700--Sobic009G106700 Sobic002G304700--Sobic005G063200 Sobic002G414800 Sobic002G414800 Sobic001G280500--Sobic002G414800 Sobic001G280500--Sobic001G149000 Sobic001G280500--Sobic005G063200 Sobic001G384200 Sobic001G384200 Sobic001G280500--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic006G265800 Sobic006G265800 Sobic001G280500--Sobic006G265800 Sobic005G063200--Sobic001G384200 Sobic005G063200--Sobic001G280500 Sobic005G063200--Sobic008G166100 Sobic003G211800 Sobic003G211800 Sobic005G063200--Sobic003G211800 Sobic005G063200--Sobic001G149000 Sobic001G076600 Sobic001G076600 Sobic005G063200--Sobic001G076600 Sobic002G097200 Sobic002G097200 Sobic005G063200--Sobic002G097200 Sobic005G063200--Sobic003G385300 Sobic005G063200--Sobic009G106700 Sobic001G114200--Sobic004G350700 Sobic006G060000 Sobic006G060000 Sobic001G114200--Sobic006G060000 Sobic001G114200--Sobic010G160300 Sobic001G114200--Sobic003G117800 Sobic003G394500 Sobic003G394500 Sobic001G114200--Sobic003G394500 Sobic006G210700 Sobic006G210700 Sobic001G114200--Sobic006G210700 Sobic001G490900 Sobic001G490900 Sobic001G114200--Sobic001G490900 Sobic007G030100 Sobic007G030100 Sobic001G114200--Sobic007G030100 Sobic007G218600 Sobic007G218600 Sobic001G114200--Sobic007G218600 Sobic001G501900--Sobic004G350700 Sobic001G501900--Sobic003G385300 Sobic008G055500 Sobic008G055500 Sobic001G501900--Sobic008G055500 Sobic001G501900--Sobic002G304700 Sobic001G501900--Sobic010G160300 Sobic001G501900--Sobic004G077300 Sobic001G501900--Sobic001G424800 Sobic008G152700 Sobic008G152700 Sobic001G501900--Sobic008G152700 Sobic001G501900--Sobic003G117800 Sobic004G350700--Sobic008G055500 Sobic004G350700--Sobic003G394500 Sobic004G350700--Sobic003G385300 Sobic004G350700--Sobic001G424800 Sobic004G350700--Sobic006G060000 Sobic004G350700--Sobic001G149000 Sobic007G172700 Sobic007G172700 Sobic004G350700--Sobic007G172700 Sobic004G350700--Sobic001G114200 Sobic004G350700--Sobic003G117800 Sobic002G007800--Sobic002G304700 Sobic002G007800--Sobic009G106700 Sobic002G007800--Sobic010G160300 Sobic010G095400 Sobic010G095400 Sobic002G007800--Sobic010G095400 Sobic006G166400 Sobic006G166400 Sobic002G007800--Sobic006G166400 Sobic002G007800--Sobic001G501900 Sobic002G057400 Sobic002G057400 Sobic002G007800--Sobic002G057400 Sobic002G007800--Sobic003G211800 Sobic002G007800--Sobic003G385300 Sobic003G117800--Sobic001G424800 Sobic003G117800--Sobic003G385300 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic001G385000 Sobic001G385000 Sobic003G117800--Sobic001G385000 Sobic009G046900 Sobic009G046900 Sobic003G117800--Sobic009G046900 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic001G149000--Sobic009G046900 Sobic001G149000--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G149000--Sobic009G178400 Sobic001G149000--Sobic001G280500 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300
Octagon: transcription factors


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