Gene annotation
| Transcriptome id | Sobic.002G007800.1 |
|---|---|
| Synonym | Sb02g000900 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) transcription factor jumonji, putative, expressed |
| UniProt | C5X786 |
| Pfam | PF02928 PF02375 PF02373 |
| Panther DB | PTHR10694 PTHR10694:SF41 |
| NCBI CDD | - |
| KEGG Orthology | K11446; KDM5, [histone H3]-trimethyl-L-lysine4 demethylase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G30810 : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g23670.1 : transcription factor jumonji, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043233 , Zm00025a044876 |
| Brachypodium | KQK06891 , KQK06892 |
| Barley | HORVU1Hr1G030740.6 , HORVU1Hr1G030740.4 , HORVU1Hr1G030740.1 , HORVU1Hr1G030740.9 , HORVU1Hr1G030740.8 , HORVU1Hr1G030740.7 , HORVU1Hr1G030740.5 , HORVU1Hr1G030740.3 , HORVU1Hr1G030740.2 , HORVU1Hr1G030740.14 , HORVU1Hr1G030740.13 , HORVU1Hr1G030740.12 , HORVU1Hr1G030740.11 , HORVU1Hr1G030740.10 |
| Wheat | TraesCS1D02G124700 , TraesCS1D02G124700 , TraesCS1B02G146900 , TraesCS1B02G146900 , TraesCS1B02G146900 , TraesCS1B02G146900 , TraesCS1B02G146900 , TraesCS1A02G133800 , TraesCS1A02G133800 , TraesCS1A02G133800 , TraesCS1A02G133800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G304700 | RFT1, putative, expressed | K06316: oligosaccharide translocation protein RFT1 |
| 2 | Sobic.009G106700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed | K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| 3 | Sobic.010G160300 | RNA recognition motif containing protein, putative, expressed | - |
| 4 | Sobic.010G095400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@urea active transporter, putative, expressed | - |
| 5 | Sobic.006G166400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ELMO/CED-12 family protein, putative, expressed | - |
| 6 | Sobic.001G501900 | appr-1-p processing enzyme family protein, putative, expressed | - |
| 7 | Sobic.002G057400 | expressed protein | K16586: HAUS augmin-like complex subunit 3 |
| 8 | Sobic.003G211800 | expressed protein | - |
| 9 | Sobic.003G385300 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 10 | Sobic.004G176200 | SacI homology domain containing protein, expressed | - |
| 11 | Sobic.004G077300 | guanine nucleotide exchange family protein, putative, expressed | K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein |
| 12 | Sobic.005G225100 | expressed protein | - |
| 13 | Sobic.003G411300 | expressed protein | - |
| 14 | Sobic.006G080700 | CSLH1 - cellulose synthase-like family H, expressed | - |
| 15 | Sobic.004G074900 | serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed | K11583: serine/threonine-protein phosphatase 2A regulatory subunit B'' |
| 16 | Sobic.007G142600 | DUF593 domain containing protein, expressed | - |
| 17 | Sobic.002G158300 | ankyrin, putative, expressed | - |
| 18 | Sobic.002G368100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@COBRA, putative, expressed | - |
| 19 | Sobic.001G490950 | - | - |
| 20 | Sobic.005G225500 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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