Gene annotation
Transcriptome id Sobic.006G166400.1
Synonym Sb06g024230
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
ELMO/CED-12 family protein, putative, expressed
UniProt C5YD41
Pfam PF04727
Panther DB PTHR12771 PTHR12771:SF24
NCBI CDD KOG2998; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44770 : ELMO/CED-12 family protein
RAP-DB (Rice) LOC_Os04g46079.1 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010380 , Zm00025a056661
Brachypodium KQJ83897
Barley HORVU2Hr1G093410.3 , HORVU2Hr1G093410.2 , HORVU2Hr1G093410.1 , HORVU2Hr1G093410.4 , HORVU2Hr1G093390.1 , HORVU2Hr1G093390.2 , HORVU2Hr1G093390.3 , HORVU2Hr1G093390.4
Wheat TraesCS2B02G410600 , TraesCS2A02G392300 , TraesCS2A02G392300 , TraesCS2A02G392300 , TraesCS2D02G390400 , TraesCS2D02G390400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G306500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
2 Sobic.001G367301 - K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
3 Sobic.006G080700 CSLH1 - cellulose synthase-like family H, expressed -
4 Sobic.004G134900 - -
5 Sobic.005G110460 - -
6 Sobic.001G225800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
7 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G074600 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G103100 DNA binding protein, putative, expressed -
10 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.009G152000 Yip1 domain containing protein, expressed -
12 Sobic.003G211800 expressed protein -
13 Sobic.004G008200 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
14 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.002G389600 transcription regulator, putative, expressed -
16 Sobic.004G228300 C2 domain containing protein, putative, expressed -
17 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
18 Sobic.008G159701 - -
19 Sobic.002G190750 - -
20 Sobic.005G225500 expressed protein -


Gene co-expression network
sample Sobic006G166400 Sobic006G166400 Sobic003G306500 Sobic003G306500 Sobic006G166400--Sobic003G306500 Sobic001G367301 Sobic001G367301 Sobic006G166400--Sobic001G367301 Sobic006G080700 Sobic006G080700 Sobic006G166400--Sobic006G080700 Sobic004G134900 Sobic004G134900 Sobic006G166400--Sobic004G134900 Sobic005G110460 Sobic005G110460 Sobic006G166400--Sobic005G110460 Sobic001G225800 Sobic001G225800 Sobic006G166400--Sobic001G225800 Sobic006G267100 Sobic006G267100 Sobic006G166400--Sobic006G267100 Sobic004G074600 Sobic004G074600 Sobic006G166400--Sobic004G074600 Sobic001G103100 Sobic001G103100 Sobic006G166400--Sobic001G103100 Sobic003G306500--Sobic006G166400 Sobic003G306500--Sobic006G267100 Sobic006G064450 Sobic006G064450 Sobic003G306500--Sobic006G064450 Sobic003G133600 Sobic003G133600 Sobic003G306500--Sobic003G133600 Sobic003G306500--Sobic005G110460 Sobic001G068066 Sobic001G068066 Sobic003G306500--Sobic001G068066 Sobic007G094700 Sobic007G094700 Sobic003G306500--Sobic007G094700 Sobic007G219601 Sobic007G219601 Sobic003G306500--Sobic007G219601 Sobic005G078000 Sobic005G078000 Sobic003G306500--Sobic005G078000 Sobic001G367301--Sobic001G225800 Sobic008G159701 Sobic008G159701 Sobic001G367301--Sobic008G159701 Sobic001G367301--Sobic005G110460 Sobic004G290600 Sobic004G290600 Sobic001G367301--Sobic004G290600 Sobic010G003200 Sobic010G003200 Sobic001G367301--Sobic010G003200 Sobic001G367301--Sobic004G134900 Sobic001G367301--Sobic001G103100 Sobic002G372000 Sobic002G372000 Sobic001G367301--Sobic002G372000 Sobic006G204500 Sobic006G204500 Sobic001G367301--Sobic006G204500 Sobic009G007300 Sobic009G007300 Sobic006G080700--Sobic009G007300 Sobic004G064200 Sobic004G064200 Sobic006G080700--Sobic004G064200 Sobic006G080700--Sobic001G225800 Sobic008G078200 Sobic008G078200 Sobic006G080700--Sobic008G078200 Sobic010G114200 Sobic010G114200 Sobic006G080700--Sobic010G114200 Sobic006G080700--Sobic005G110460 Sobic009G068400 Sobic009G068400 Sobic006G080700--Sobic009G068400 Sobic009G152000 Sobic009G152000 Sobic006G080700--Sobic009G152000 Sobic010G179600 Sobic010G179600 Sobic006G080700--Sobic010G179600 Sobic005G035250 Sobic005G035250 Sobic004G134900--Sobic005G035250 Sobic007G148233 Sobic007G148233 Sobic004G134900--Sobic007G148233 Sobic001G539880 Sobic001G539880 Sobic004G134900--Sobic001G539880 Sobic002G225800 Sobic002G225800 Sobic004G134900--Sobic002G225800 Sobic003G195400 Sobic003G195400 Sobic004G134900--Sobic003G195400 Sobic004G024800 Sobic004G024800 Sobic004G134900--Sobic004G024800 Sobic002G128700 Sobic002G128700 Sobic004G134900--Sobic002G128700 Sobic005G035200 Sobic005G035200 Sobic004G134900--Sobic005G035200 Sobic005G009700 Sobic005G009700 Sobic004G134900--Sobic005G009700 Sobic007G223400 Sobic007G223400 Sobic005G110460--Sobic007G223400 Sobic001G488950 Sobic001G488950 Sobic005G110460--Sobic001G488950 Sobic005G110460--Sobic009G152000 Sobic005G009500 Sobic005G009500 Sobic005G110460--Sobic005G009500 Sobic009G169500 Sobic009G169500 Sobic005G110460--Sobic009G169500 Sobic001G306200 Sobic001G306200 Sobic005G110460--Sobic001G306200 Sobic002G414150 Sobic002G414150 Sobic005G110460--Sobic002G414150 Sobic005G006300 Sobic005G006300 Sobic005G110460--Sobic005G006300 Sobic006G142200 Sobic006G142200 Sobic005G110460--Sobic006G142200 Sobic001G225800--Sobic005G110460 Sobic010G276100 Sobic010G276100 Sobic001G225800--Sobic010G276100 Sobic004G002800 Sobic004G002800 Sobic001G225800--Sobic004G002800 Sobic003G335200 Sobic003G335200 Sobic001G225800--Sobic003G335200 Sobic001G252900 Sobic001G252900 Sobic001G225800--Sobic001G252900 Sobic005G025600 Sobic005G025600 Sobic001G225800--Sobic005G025600 Sobic009G075400 Sobic009G075400 Sobic001G225800--Sobic009G075400 Sobic005G023700 Sobic005G023700 Sobic001G225800--Sobic005G023700 Sobic010G006900 Sobic010G006900 Sobic001G225800--Sobic010G006900 Sobic008G071300 Sobic008G071300 Sobic006G267100--Sobic008G071300 Sobic001G414650 Sobic001G414650 Sobic006G267100--Sobic001G414650 Sobic002G340600 Sobic002G340600 Sobic006G267100--Sobic002G340600 Sobic003G114600 Sobic003G114600 Sobic006G267100--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic006G267100--Sobic002G283200 Sobic006G105100 Sobic006G105100 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic003G290500 Sobic003G290500 Sobic006G267100--Sobic003G290500 Sobic002G389600 Sobic002G389600 Sobic004G074600--Sobic002G389600 Sobic007G039200 Sobic007G039200 Sobic004G074600--Sobic007G039200 Sobic006G171600 Sobic006G171600 Sobic004G074600--Sobic006G171600 Sobic004G250800 Sobic004G250800 Sobic004G074600--Sobic004G250800 Sobic008G166100 Sobic008G166100 Sobic004G074600--Sobic008G166100 Sobic004G062200 Sobic004G062200 Sobic004G074600--Sobic004G062200 Sobic001G135800 Sobic001G135800 Sobic004G074600--Sobic001G135800 Sobic002G414800 Sobic002G414800 Sobic004G074600--Sobic002G414800 Sobic004G279200 Sobic004G279200 Sobic004G074600--Sobic004G279200 Sobic007G091400 Sobic007G091400 Sobic001G103100--Sobic007G091400 Sobic010G016200 Sobic010G016200 Sobic001G103100--Sobic010G016200 Sobic009G105100 Sobic009G105100 Sobic001G103100--Sobic009G105100 Sobic005G145400 Sobic005G145400 Sobic001G103100--Sobic005G145400 Sobic004G099200 Sobic004G099200 Sobic001G103100--Sobic004G099200 Sobic001G103100--Sobic010G276100 Sobic009G175400 Sobic009G175400 Sobic001G103100--Sobic009G175400 Sobic004G071900 Sobic004G071900 Sobic001G103100--Sobic004G071900 Sobic010G252600 Sobic010G252600 Sobic001G103100--Sobic010G252600
Octagon: transcription factors


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