Gene annotation
Transcriptome id Sobic.003G306500.1
Synonym AUR3, Gretchen Hagen3, GH3-2, YDK1, BRU6, GH3.2, SbGH3-8;Gretchen Hagen3, Sb03g035500, SbGH3-8
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt C5XKW5
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF9
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37390 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os01g55940.1 : OsGH3.2 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a048626 , Zm00025a015690 , Zm00025a027437 , Zm00025a002969 , Zm00025a015082
Brachypodium KQK09904 , KQK15444 , KQJ88359
Barley HORVU3Hr1G074230.1 , HORVU3Hr1G074230.3 , HORVU3Hr1G074230.2 , HORVU2Hr1G034670.4 , HORVU2Hr1G034670.5 , HORVU2Hr1G034670.6 , HORVU2Hr1G034670.1 , HORVU2Hr1G034670.2 , HORVU2Hr1G034670.3 , HORVU2Hr1G088460.2 , HORVU2Hr1G088460.3 , HORVU2Hr1G088460.1
Wheat TraesCS3A02G301200 , TraesCS3B02G335300 , TraesCS3D02G300600 , TraesCS2D02G191800 , TraesCS2A02G183900 , TraesCS2B02G210600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G166400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ELMO/CED-12 family protein, putative, expressed -
2 Sobic.006G267100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G064450 - -
4 Sobic.003G133600 major facilitator superfamily antiporter, putative, expressed -
5 Sobic.005G110460 - -
6 Sobic.001G068066 - -
7 Sobic.007G094700 - -
8 Sobic.007G219601 - -
9 Sobic.005G078000 - -
10 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
11 Sobic.004G203150 - -
12 Sobic.001G225800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
13 Sobic.009G152000 Yip1 domain containing protein, expressed -
14 Sobic.002G424200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
15 Sobic.002G340600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
16 Sobic.004G328200 - -
17 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
18 Sobic.005G144500 glycosyltransferase, putative, expressed -
19 Sobic.006G080700 CSLH1 - cellulose synthase-like family H, expressed -
20 Sobic.009G207700 cell cycle control protein, putative, expressed -


Gene co-expression network
sample Sobic003G306500 Sobic003G306500 Sobic006G166400 Sobic006G166400 Sobic003G306500--Sobic006G166400 Sobic006G267100 Sobic006G267100 Sobic003G306500--Sobic006G267100 Sobic006G064450 Sobic006G064450 Sobic003G306500--Sobic006G064450 Sobic003G133600 Sobic003G133600 Sobic003G306500--Sobic003G133600 Sobic005G110460 Sobic005G110460 Sobic003G306500--Sobic005G110460 Sobic001G068066 Sobic001G068066 Sobic003G306500--Sobic001G068066 Sobic007G094700 Sobic007G094700 Sobic003G306500--Sobic007G094700 Sobic007G219601 Sobic007G219601 Sobic003G306500--Sobic007G219601 Sobic005G078000 Sobic005G078000 Sobic003G306500--Sobic005G078000 Sobic006G166400--Sobic003G306500 Sobic001G367301 Sobic001G367301 Sobic006G166400--Sobic001G367301 Sobic006G080700 Sobic006G080700 Sobic006G166400--Sobic006G080700 Sobic004G134900 Sobic004G134900 Sobic006G166400--Sobic004G134900 Sobic006G166400--Sobic005G110460 Sobic001G225800 Sobic001G225800 Sobic006G166400--Sobic001G225800 Sobic006G166400--Sobic006G267100 Sobic004G074600 Sobic004G074600 Sobic006G166400--Sobic004G074600 Sobic001G103100 Sobic001G103100 Sobic006G166400--Sobic001G103100 Sobic008G071300 Sobic008G071300 Sobic006G267100--Sobic008G071300 Sobic001G414650 Sobic001G414650 Sobic006G267100--Sobic001G414650 Sobic002G340600 Sobic002G340600 Sobic006G267100--Sobic002G340600 Sobic003G114600 Sobic003G114600 Sobic006G267100--Sobic003G114600 Sobic002G283200 Sobic002G283200 Sobic006G267100--Sobic002G283200 Sobic006G105100 Sobic006G105100 Sobic006G267100--Sobic006G105100 Sobic004G042501 Sobic004G042501 Sobic006G267100--Sobic004G042501 Sobic002G380300 Sobic002G380300 Sobic006G267100--Sobic002G380300 Sobic003G290500 Sobic003G290500 Sobic006G267100--Sobic003G290500 Sobic006G064450--Sobic003G133600 Sobic006G064450--Sobic007G094700 Sobic006G064450--Sobic007G219601 Sobic004G203150 Sobic004G203150 Sobic006G064450--Sobic004G203150 Sobic006G064450--Sobic001G068066 Sobic006G064450--Sobic005G078000 Sobic002G418300 Sobic002G418300 Sobic006G064450--Sobic002G418300 Sobic004G328200 Sobic004G328200 Sobic006G064450--Sobic004G328200 Sobic005G144500 Sobic005G144500 Sobic006G064450--Sobic005G144500 Sobic003G133600--Sobic007G094700 Sobic003G133600--Sobic004G203150 Sobic003G133600--Sobic007G219601 Sobic003G133600--Sobic001G068066 Sobic003G133600--Sobic004G328200 Sobic003G133600--Sobic002G418300 Sobic001G029300 Sobic001G029300 Sobic003G133600--Sobic001G029300 Sobic003G133600--Sobic006G064450 Sobic003G133600--Sobic005G078000 Sobic007G223400 Sobic007G223400 Sobic005G110460--Sobic007G223400 Sobic001G488950 Sobic001G488950 Sobic005G110460--Sobic001G488950 Sobic009G152000 Sobic009G152000 Sobic005G110460--Sobic009G152000 Sobic005G009500 Sobic005G009500 Sobic005G110460--Sobic005G009500 Sobic009G169500 Sobic009G169500 Sobic005G110460--Sobic009G169500 Sobic001G306200 Sobic001G306200 Sobic005G110460--Sobic001G306200 Sobic002G414150 Sobic002G414150 Sobic005G110460--Sobic002G414150 Sobic005G006300 Sobic005G006300 Sobic005G110460--Sobic005G006300 Sobic006G142200 Sobic006G142200 Sobic005G110460--Sobic006G142200 Sobic001G068066--Sobic005G078000 Sobic009G207700 Sobic009G207700 Sobic001G068066--Sobic009G207700 Sobic006G074150 Sobic006G074150 Sobic001G068066--Sobic006G074150 Sobic002G190750 Sobic002G190750 Sobic001G068066--Sobic002G190750 Sobic003G019450 Sobic003G019450 Sobic001G068066--Sobic003G019450 Sobic001G068066--Sobic003G133600 Sobic001G068066--Sobic001G029300 Sobic001G163666 Sobic001G163666 Sobic001G068066--Sobic001G163666 Sobic009G250300 Sobic009G250300 Sobic001G068066--Sobic009G250300 Sobic007G094700--Sobic004G203150 Sobic007G094700--Sobic007G219601 Sobic007G094700--Sobic003G133600 Sobic007G094700--Sobic002G418300 Sobic001G417700 Sobic001G417700 Sobic007G094700--Sobic001G417700 Sobic007G094700--Sobic004G328200 Sobic008G155700 Sobic008G155700 Sobic007G094700--Sobic008G155700 Sobic009G008000 Sobic009G008000 Sobic007G094700--Sobic009G008000 Sobic007G094700--Sobic001G029300 Sobic007G219601--Sobic007G094700 Sobic007G219601--Sobic004G203150 Sobic007G219601--Sobic003G133600 Sobic007G219601--Sobic002G418300 Sobic007G219601--Sobic006G064450 Sobic007G219601--Sobic008G155700 Sobic007G219601--Sobic009G008000 Sobic007G219601--Sobic001G417700 Sobic007G219601--Sobic004G328200 Sobic005G078000--Sobic001G068066 Sobic005G078000--Sobic009G207700 Sobic005G078000--Sobic006G074150 Sobic005G078000--Sobic003G133600 Sobic005G078000--Sobic002G190750 Sobic005G078000--Sobic003G019450 Sobic005G078000--Sobic001G029300 Sobic005G078000--Sobic001G163666 Sobic010G177200 Sobic010G177200 Sobic005G078000--Sobic010G177200
Octagon: transcription factors


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