Gene annotation
Transcriptome id Sobic.001G225800.5,Sobic.001G225800.6,Sobic.001G225800.4,Sobic.001G225800.1,Sobic.001G225800.3,Sobic.001G225800.2
Synonym Sb01g019780
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
CCT motif family protein, expressed
UniProt A0A1Z5S780 , A0A1B6QKE4 , A0A1B6QKD5 , C5WZD0 , A0A1B6QKE7 , A0A1Z5S6V6
Pfam PF06203
Panther DB PTHR31319 PTHR31319:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G04500 : CCT motif family protein
RAP-DB (Rice) LOC_Os10g32900.1,LOC_Os10g32900.2 : CCT motif family protein, expressed
MaizeGDB (Corn) Zm00025a017668 , Zm00025a006676
Brachypodium KQJ97011 , KQJ97012 , PNT67506 , PNT67507
Barley -
Wheat TraesCS1A02G148300 , TraesCS1B02G166000 , TraesCS1B02G166000 , TraesCS1B02G166000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110460 - -
2 Sobic.010G276100 transporter family protein, putative, expressed -
3 Sobic.004G002800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.003G335200 monocopper oxidase, putative, expressed -
5 Sobic.001G252900 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
6 Sobic.005G025600 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed -
7 Sobic.009G075400 RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
8 Sobic.005G023700 pollen allergen Cyn d 23, putative, expressed -
9 Sobic.010G006900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.006G263500 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.009G082900 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
12 Sobic.002G303500 actin-depolymerizing factor, putative, expressed K05765: cofilin
13 Sobic.002G066300 expressed protein -
14 Sobic.006G159000 OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed -
15 Sobic.007G175800 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
16 Sobic.007G222500 - -
17 Sobic.004G024000 OsCML11 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
18 Sobic.008G027900 pollen allergen, putative, expressed -
19 Sobic.001G288400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.001G348600 patatin, putative, expressed -


Gene co-expression network
sample Sobic001G225800 Sobic001G225800 Sobic005G110460 Sobic005G110460 Sobic001G225800--Sobic005G110460 Sobic010G276100 Sobic010G276100 Sobic001G225800--Sobic010G276100 Sobic004G002800 Sobic004G002800 Sobic001G225800--Sobic004G002800 Sobic003G335200 Sobic003G335200 Sobic001G225800--Sobic003G335200 Sobic001G252900 Sobic001G252900 Sobic001G225800--Sobic001G252900 Sobic005G025600 Sobic005G025600 Sobic001G225800--Sobic005G025600 Sobic009G075400 Sobic009G075400 Sobic001G225800--Sobic009G075400 Sobic005G023700 Sobic005G023700 Sobic001G225800--Sobic005G023700 Sobic010G006900 Sobic010G006900 Sobic001G225800--Sobic010G006900 Sobic007G223400 Sobic007G223400 Sobic005G110460--Sobic007G223400 Sobic001G488950 Sobic001G488950 Sobic005G110460--Sobic001G488950 Sobic009G152000 Sobic009G152000 Sobic005G110460--Sobic009G152000 Sobic005G009500 Sobic005G009500 Sobic005G110460--Sobic005G009500 Sobic009G169500 Sobic009G169500 Sobic005G110460--Sobic009G169500 Sobic001G306200 Sobic001G306200 Sobic005G110460--Sobic001G306200 Sobic002G414150 Sobic002G414150 Sobic005G110460--Sobic002G414150 Sobic005G006300 Sobic005G006300 Sobic005G110460--Sobic005G006300 Sobic006G142200 Sobic006G142200 Sobic005G110460--Sobic006G142200 Sobic009G175400 Sobic009G175400 Sobic010G276100--Sobic009G175400 Sobic010G040400 Sobic010G040400 Sobic010G276100--Sobic010G040400 Sobic010G144700 Sobic010G144700 Sobic010G276100--Sobic010G144700 Sobic009G082900 Sobic009G082900 Sobic010G276100--Sobic009G082900 Sobic001G092500 Sobic001G092500 Sobic010G276100--Sobic001G092500 Sobic006G259100 Sobic006G259100 Sobic010G276100--Sobic006G259100 Sobic005G145400 Sobic005G145400 Sobic010G276100--Sobic005G145400 Sobic010G276100--Sobic004G002800 Sobic010G276100--Sobic001G252900 Sobic004G002800--Sobic005G025600 Sobic004G002800--Sobic001G252900 Sobic004G002800--Sobic009G082900 Sobic004G002800--Sobic003G335200 Sobic006G263500 Sobic006G263500 Sobic004G002800--Sobic006G263500 Sobic006G159000 Sobic006G159000 Sobic004G002800--Sobic006G159000 Sobic004G002800--Sobic005G023700 Sobic004G002800--Sobic010G006900 Sobic003G073540 Sobic003G073540 Sobic004G002800--Sobic003G073540 Sobic003G335200--Sobic009G075400 Sobic003G335200--Sobic004G002800 Sobic003G335200--Sobic005G023700 Sobic003G335200--Sobic005G025600 Sobic003G335200--Sobic006G263500 Sobic003G335200--Sobic006G159000 Sobic002G066300 Sobic002G066300 Sobic003G335200--Sobic002G066300 Sobic003G335200--Sobic010G006900 Sobic003G335200--Sobic001G252900 Sobic001G252900--Sobic004G002800 Sobic001G252900--Sobic009G082900 Sobic001G252900--Sobic005G025600 Sobic001G252900--Sobic003G073540 Sobic007G222500 Sobic007G222500 Sobic001G252900--Sobic007G222500 Sobic001G252900--Sobic006G263500 Sobic001G252900--Sobic003G335200 Sobic001G252900--Sobic010G006900 Sobic001G528700 Sobic001G528700 Sobic001G252900--Sobic001G528700 Sobic005G025600--Sobic006G263500 Sobic005G025600--Sobic004G002800 Sobic005G025600--Sobic010G006900 Sobic005G025600--Sobic006G159000 Sobic005G025600--Sobic005G023700 Sobic005G025600--Sobic001G252900 Sobic005G025600--Sobic003G335200 Sobic008G028000 Sobic008G028000 Sobic005G025600--Sobic008G028000 Sobic008G027900 Sobic008G027900 Sobic005G025600--Sobic008G027900 Sobic009G075400--Sobic003G335200 Sobic009G075400--Sobic004G002800 Sobic008G043300 Sobic008G043300 Sobic009G075400--Sobic008G043300 Sobic008G053750 Sobic008G053750 Sobic009G075400--Sobic008G053750 Sobic009G075400--Sobic006G159000 Sobic009G075400--Sobic005G025600 Sobic001G288400 Sobic001G288400 Sobic009G075400--Sobic001G288400 Sobic009G075400--Sobic009G082900 Sobic009G075400--Sobic005G023700 Sobic005G023700--Sobic010G006900 Sobic005G023700--Sobic006G263500 Sobic005G023700--Sobic008G027900 Sobic005G023700--Sobic005G025600 Sobic005G023700--Sobic002G066300 Sobic005G023700--Sobic006G159000 Sobic005G023700--Sobic008G028000 Sobic005G023700--Sobic003G335200 Sobic009G091600 Sobic009G091600 Sobic005G023700--Sobic009G091600 Sobic010G006900--Sobic006G263500 Sobic010G006900--Sobic005G023700 Sobic010G006900--Sobic005G025600 Sobic010G006900--Sobic008G027900 Sobic010G006900--Sobic006G159000 Sobic010G006900--Sobic008G028000 Sobic010G006900--Sobic009G091600 Sobic010G006900--Sobic002G066300 Sobic010G006900--Sobic004G002800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.