Gene annotation
Transcriptome id Sobic.006G159000.1
Synonym Sb06g023600
Functional annotation OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed
UniProt C5YCW9
Pfam PF00412
Panther DB PTHR24206 PTHR24206:SF30
NCBI CDD KOG1700; Regulatory protein MLP and related LIM proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G61230 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os04g45010.1 : OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed
MaizeGDB (Corn) Zm00025a032123 , Zm00025a020988 , Zm00025a056583 , Zm00025a010447
Brachypodium KQJ83753 , KQJ83754 , PNT69126 , PNT69127
Barley HORVU6Hr1G060580.8 , HORVU6Hr1G060580.3 , HORVU6Hr1G060580.2 , HORVU6Hr1G060580.1 , HORVU6Hr1G060580.7 , HORVU6Hr1G060580.6 , HORVU6Hr1G060580.5 , HORVU6Hr1G060580.4 , HORVU5Hr1G031550.1 , HORVU5Hr1G031550.3 , HORVU5Hr1G031550.2
Wheat TraesCS2D02G367100 , TraesCS6B02G265100 , TraesCS6D02G219200 , TraesCS6A02G236600 , TraesCS2A02G370800 , TraesCS2B02G388000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G025600 plant invertase/pectin methylesterase inhibitor domain containing protein, expressed -
2 Sobic.010G006900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
3 Sobic.001G306400 expansin precursor, putative, expressed -
4 Sobic.005G023700 pollen allergen Cyn d 23, putative, expressed -
5 Sobic.006G263500 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.001G412900 - -
7 Sobic.001G288400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
8 Sobic.008G028000 pollen allergen, putative, expressed -
9 Sobic.004G002800 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.001G093100 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
11 Sobic.008G027900 pollen allergen, putative, expressed -
12 Sobic.001G024900 expressed protein -
13 Sobic.003G335200 monocopper oxidase, putative, expressed -
14 Sobic.001G306500 expansin precursor, putative, expressed -
15 Sobic.005G142400 plant protein of unknown function domain containing protein, expressed -
16 Sobic.009G075400 RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
17 Sobic.002G066300 expressed protein -
18 Sobic.009G082900 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
19 Sobic.001G269800 - -
20 Sobic.004G100900 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic006G159000 Sobic006G159000 Sobic005G025600 Sobic005G025600 Sobic006G159000--Sobic005G025600 Sobic010G006900 Sobic010G006900 Sobic006G159000--Sobic010G006900 Sobic001G306400 Sobic001G306400 Sobic006G159000--Sobic001G306400 Sobic005G023700 Sobic005G023700 Sobic006G159000--Sobic005G023700 Sobic006G263500 Sobic006G263500 Sobic006G159000--Sobic006G263500 Sobic001G412900 Sobic001G412900 Sobic006G159000--Sobic001G412900 Sobic001G288400 Sobic001G288400 Sobic006G159000--Sobic001G288400 Sobic008G028000 Sobic008G028000 Sobic006G159000--Sobic008G028000 Sobic004G002800 Sobic004G002800 Sobic006G159000--Sobic004G002800 Sobic005G025600--Sobic006G263500 Sobic005G025600--Sobic004G002800 Sobic005G025600--Sobic010G006900 Sobic005G025600--Sobic006G159000 Sobic005G025600--Sobic005G023700 Sobic001G252900 Sobic001G252900 Sobic005G025600--Sobic001G252900 Sobic003G335200 Sobic003G335200 Sobic005G025600--Sobic003G335200 Sobic005G025600--Sobic008G028000 Sobic008G027900 Sobic008G027900 Sobic005G025600--Sobic008G027900 Sobic010G006900--Sobic006G263500 Sobic010G006900--Sobic005G023700 Sobic010G006900--Sobic005G025600 Sobic010G006900--Sobic008G027900 Sobic010G006900--Sobic006G159000 Sobic010G006900--Sobic008G028000 Sobic009G091600 Sobic009G091600 Sobic010G006900--Sobic009G091600 Sobic002G066300 Sobic002G066300 Sobic010G006900--Sobic002G066300 Sobic010G006900--Sobic004G002800 Sobic005G142400 Sobic005G142400 Sobic001G306400--Sobic005G142400 Sobic008G154300 Sobic008G154300 Sobic001G306400--Sobic008G154300 Sobic001G306400--Sobic006G159000 Sobic001G269800 Sobic001G269800 Sobic001G306400--Sobic001G269800 Sobic008G017500 Sobic008G017500 Sobic001G306400--Sobic008G017500 Sobic001G024900 Sobic001G024900 Sobic001G306400--Sobic001G024900 Sobic002G053800 Sobic002G053800 Sobic001G306400--Sobic002G053800 Sobic010G091800 Sobic010G091800 Sobic001G306400--Sobic010G091800 Sobic001G306500 Sobic001G306500 Sobic001G306400--Sobic001G306500 Sobic005G023700--Sobic010G006900 Sobic005G023700--Sobic006G263500 Sobic005G023700--Sobic008G027900 Sobic005G023700--Sobic005G025600 Sobic005G023700--Sobic002G066300 Sobic005G023700--Sobic006G159000 Sobic005G023700--Sobic008G028000 Sobic005G023700--Sobic003G335200 Sobic005G023700--Sobic009G091600 Sobic006G263500--Sobic010G006900 Sobic006G263500--Sobic005G025600 Sobic006G263500--Sobic005G023700 Sobic006G263500--Sobic008G027900 Sobic006G263500--Sobic008G028000 Sobic006G263500--Sobic006G159000 Sobic006G263500--Sobic004G002800 Sobic006G263500--Sobic009G091600 Sobic004G029032 Sobic004G029032 Sobic006G263500--Sobic004G029032 Sobic001G412900--Sobic006G159000 Sobic001G412900--Sobic005G025600 Sobic001G412900--Sobic010G006900 Sobic001G412900--Sobic006G263500 Sobic001G412900--Sobic005G023700 Sobic001G412900--Sobic008G028000 Sobic001G412900--Sobic001G306400 Sobic001G412900--Sobic004G002800 Sobic001G412900--Sobic008G027900 Sobic001G288400--Sobic001G306500 Sobic001G288400--Sobic001G024900 Sobic007G222100 Sobic007G222100 Sobic001G288400--Sobic007G222100 Sobic010G051000 Sobic010G051000 Sobic001G288400--Sobic010G051000 Sobic001G093100 Sobic001G093100 Sobic001G288400--Sobic001G093100 Sobic001G288400--Sobic006G159000 Sobic004G100900 Sobic004G100900 Sobic001G288400--Sobic004G100900 Sobic009G082900 Sobic009G082900 Sobic001G288400--Sobic009G082900 Sobic010G144700 Sobic010G144700 Sobic001G288400--Sobic010G144700 Sobic008G028000--Sobic008G027900 Sobic008G028000--Sobic005G023700 Sobic008G028000--Sobic006G263500 Sobic008G028000--Sobic010G006900 Sobic008G028000--Sobic005G025600 Sobic008G028000--Sobic009G091600 Sobic008G028000--Sobic006G159000 Sobic008G028000--Sobic004G029032 Sobic008G028000--Sobic001G412900 Sobic004G002800--Sobic005G025600 Sobic004G002800--Sobic001G252900 Sobic004G002800--Sobic009G082900 Sobic004G002800--Sobic003G335200 Sobic004G002800--Sobic006G263500 Sobic004G002800--Sobic006G159000 Sobic004G002800--Sobic005G023700 Sobic004G002800--Sobic010G006900 Sobic003G073540 Sobic003G073540 Sobic004G002800--Sobic003G073540
Octagon: transcription factors


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