Gene annotation
Transcriptome id Sobic.004G077300.1
Synonym Sb04g006380
Functional annotation guanine nucleotide exchange family protein, putative, expressed
UniProt A0A194YNB2
Pfam PF16213 PF09324 PF12783 PF01369
Panther DB PTHR10663 PTHR10663:SF108
NCBI CDD -
KEGG Orthology K18442; ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
Gene Ontology GO:0005086; ARF guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT4G38200 : SEC7-like guanine nucleotide exchange family protein
RAP-DB (Rice) LOC_Os03g14260.1 : guanine nucleotide exchange family protein, putative, expressed
MaizeGDB (Corn) Zm00025a034679
Brachypodium KQJ93809 , PNT66079 , PNT66078 , KQJ93806 , KQJ93807 , KQJ93808 , PNT66080 , KQK17630 , KQJ93810 , KQK17629
Barley HORVU6Hr1G034130.20 , HORVU6Hr1G034130.13 , HORVU6Hr1G034130.12 , HORVU6Hr1G034130.11 , HORVU6Hr1G034130.10 , HORVU6Hr1G034130.17 , HORVU6Hr1G034130.16 , HORVU6Hr1G034130.15 , HORVU6Hr1G034130.14 , HORVU6Hr1G034130.19 , HORVU6Hr1G034130.18 , HORVU7Hr1G093440.5 , HORVU7Hr1G093440.4 , HORVU7Hr1G093440.7 , HORVU7Hr1G093440.6 , HORVU7Hr1G093440.1 , HORVU7Hr1G093440.3 , HORVU7Hr1G093440.2 , HORVU6Hr1G034130.2 , HORVU6Hr1G034130.7 , HORVU6Hr1G034130.6 , HORVU6Hr1G034130.5 , HORVU6Hr1G034130.4 , HORVU6Hr1G034130.9 , HORVU6Hr1G034130.8
Wheat TraesCS7A02G398300 , TraesCS6B02G195700 , TraesCS6A02G168000 , TraesCS7B02G299100 , TraesCS7D02G392600 , TraesCS6D02G157000 , TraesCS6D02G157000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G149000 FAR1 family protein, expressed -
2 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
3 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
4 Sobic.004G176200 SacI homology domain containing protein, expressed -
5 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
6 Sobic.006G080700 CSLH1 - cellulose synthase-like family H, expressed -
7 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
8 Sobic.004G350700 kelch repeat protein, putative, expressed -
9 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
10 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
11 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
12 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
13 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
14 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
15 Sobic.001G387300 exostosin family domain containing protein, expressed -
16 Sobic.004G064200 STE_PAK_Ste20_STLK.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
17 Sobic.001G340800 exocyst complex component 6, putative, expressed -
18 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.009G252200 expressed protein K11644: paired amphipathic helix protein Sin3a
20 Sobic.007G039200 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G077300 Sobic004G077300 Sobic001G149000 Sobic001G149000 Sobic004G077300--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic004G077300--Sobic003G385300 Sobic008G152700 Sobic008G152700 Sobic004G077300--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic004G077300--Sobic004G176200 Sobic001G378800 Sobic001G378800 Sobic004G077300--Sobic001G378800 Sobic006G080700 Sobic006G080700 Sobic004G077300--Sobic006G080700 Sobic001G384200 Sobic001G384200 Sobic004G077300--Sobic001G384200 Sobic004G350700 Sobic004G350700 Sobic004G077300--Sobic004G350700 Sobic002G180800 Sobic002G180800 Sobic004G077300--Sobic002G180800 Sobic001G149000--Sobic004G077300 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic009G046900 Sobic009G046900 Sobic001G149000--Sobic009G046900 Sobic001G149000--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G149000--Sobic009G178400 Sobic001G280500 Sobic001G280500 Sobic001G149000--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic001G149000--Sobic008G166100 Sobic001G387300 Sobic001G387300 Sobic001G149000--Sobic001G387300 Sobic003G385300--Sobic001G149000 Sobic003G402800 Sobic003G402800 Sobic003G385300--Sobic003G402800 Sobic003G385300--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic003G385300--Sobic004G064200 Sobic003G385300--Sobic004G176200 Sobic001G257800 Sobic001G257800 Sobic003G385300--Sobic001G257800 Sobic005G225500 Sobic005G225500 Sobic003G385300--Sobic005G225500 Sobic007G039200 Sobic007G039200 Sobic003G385300--Sobic007G039200 Sobic002G074800 Sobic002G074800 Sobic003G385300--Sobic002G074800 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic003G117800 Sobic003G117800 Sobic008G152700--Sobic003G117800 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic007G172700 Sobic007G172700 Sobic008G152700--Sobic007G172700 Sobic003G428000 Sobic003G428000 Sobic008G152700--Sobic003G428000 Sobic003G394500 Sobic003G394500 Sobic008G152700--Sobic003G394500 Sobic001G385000 Sobic001G385000 Sobic008G152700--Sobic001G385000 Sobic004G176200--Sobic003G385300 Sobic002G103800 Sobic002G103800 Sobic004G176200--Sobic002G103800 Sobic007G004300 Sobic007G004300 Sobic004G176200--Sobic007G004300 Sobic004G176200--Sobic004G077300 Sobic004G176200--Sobic004G064200 Sobic004G176200--Sobic001G257800 Sobic004G176200--Sobic002G180800 Sobic001G356200 Sobic001G356200 Sobic004G176200--Sobic001G356200 Sobic004G176200--Sobic006G080700 Sobic006G232800 Sobic006G232800 Sobic001G378800--Sobic006G232800 Sobic001G378800--Sobic003G394500 Sobic001G047600 Sobic001G047600 Sobic001G378800--Sobic001G047600 Sobic001G378800--Sobic004G077300 Sobic001G378800--Sobic001G356200 Sobic003G372200 Sobic003G372200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic003G260600 Sobic003G260600 Sobic001G378800--Sobic003G260600 Sobic001G378800--Sobic004G350700 Sobic009G007300 Sobic009G007300 Sobic006G080700--Sobic009G007300 Sobic006G080700--Sobic004G064200 Sobic001G225800 Sobic001G225800 Sobic006G080700--Sobic001G225800 Sobic008G078200 Sobic008G078200 Sobic006G080700--Sobic008G078200 Sobic010G114200 Sobic010G114200 Sobic006G080700--Sobic010G114200 Sobic005G110460 Sobic005G110460 Sobic006G080700--Sobic005G110460 Sobic009G068400 Sobic009G068400 Sobic006G080700--Sobic009G068400 Sobic009G152000 Sobic009G152000 Sobic006G080700--Sobic009G152000 Sobic010G179600 Sobic010G179600 Sobic006G080700--Sobic010G179600 Sobic003G024100 Sobic003G024100 Sobic001G384200--Sobic003G024100 Sobic001G340800 Sobic001G340800 Sobic001G384200--Sobic001G340800 Sobic001G384200--Sobic008G166100 Sobic001G384200--Sobic009G178400 Sobic001G370400 Sobic001G370400 Sobic001G384200--Sobic001G370400 Sobic003G244400 Sobic003G244400 Sobic001G384200--Sobic003G244400 Sobic001G432200 Sobic001G432200 Sobic001G384200--Sobic001G432200 Sobic003G175350 Sobic003G175350 Sobic001G384200--Sobic003G175350 Sobic001G384200--Sobic007G039200 Sobic008G055500 Sobic008G055500 Sobic004G350700--Sobic008G055500 Sobic004G350700--Sobic003G394500 Sobic004G350700--Sobic003G385300 Sobic004G350700--Sobic001G424800 Sobic006G060000 Sobic006G060000 Sobic004G350700--Sobic006G060000 Sobic004G350700--Sobic001G149000 Sobic004G350700--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic004G350700--Sobic001G114200 Sobic004G350700--Sobic003G117800 Sobic002G180800--Sobic004G064200 Sobic002G180800--Sobic006G080700 Sobic002G180800--Sobic010G114200 Sobic008G054200 Sobic008G054200 Sobic002G180800--Sobic008G054200 Sobic002G180800--Sobic002G074800 Sobic002G180800--Sobic009G007300 Sobic003G014200 Sobic003G014200 Sobic002G180800--Sobic003G014200 Sobic002G180800--Sobic002G103800 Sobic003G024400 Sobic003G024400 Sobic002G180800--Sobic003G024400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.