Gene annotation
Transcriptome id Sobic.002G304700.1
Synonym
Functional annotation RFT1, putative, expressed
UniProt C5X8K1
Pfam PF04506
Panther DB PTHR13117
NCBI CDD KOG2864; Nuclear division RFT1 protein
KEGG Orthology K06316; oligosaccharide translocation protein RFT1
Gene Ontology GO:0016021; integral component of membrane GO:0006869lipid transport GO:0005319lipid transporter activity


Orthologs (automatic annotation)
TAIR AT5G07630 : lipid transporters
RAP-DB (Rice) LOC_Os07g30250.1 : RFT1, putative, expressed
MaizeGDB (Corn) Zm00025a014675
Brachypodium PNT75073 , PNT75072 , PNT75071 , KQK16198 , KQK16199
Barley -
Wheat TraesCS6A02G351800 , TraesCS6B02G384900 , TraesCS6A02G351800 , TraesCS6D02G334400 , TraesCS6D02G334400 , TraesCS3D02G387500 , TraesCS3B02G425800
Populus -


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cDNA sequences
Sobic.002G304700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
2 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
3 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
4 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
5 Sobic.001G149000 FAR1 family protein, expressed -
6 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
7 Sobic.002G007800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
8 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.005G063200 expressed protein -
10 Sobic.009G252200 expressed protein K11644: paired amphipathic helix protein Sin3a
11 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
12 Sobic.004G350700 kelch repeat protein, putative, expressed -
13 Sobic.003G211800 expressed protein -
14 Sobic.002G057400 expressed protein K16586: HAUS augmin-like complex subunit 3
15 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
16 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
17 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
18 Sobic.002G213900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
19 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
20 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G304700 Sobic002G304700 Sobic010G160300 Sobic010G160300 Sobic002G304700--Sobic010G160300 Sobic006G156400 Sobic006G156400 Sobic002G304700--Sobic006G156400 Sobic001G280500 Sobic001G280500 Sobic002G304700--Sobic001G280500 Sobic003G385300 Sobic003G385300 Sobic002G304700--Sobic003G385300 Sobic001G149000 Sobic001G149000 Sobic002G304700--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic002G304700--Sobic004G077300 Sobic002G007800 Sobic002G007800 Sobic002G304700--Sobic002G007800 Sobic009G106700 Sobic009G106700 Sobic002G304700--Sobic009G106700 Sobic005G063200 Sobic005G063200 Sobic002G304700--Sobic005G063200 Sobic010G160300--Sobic002G304700 Sobic010G160300--Sobic001G280500 Sobic010G160300--Sobic005G063200 Sobic001G114200 Sobic001G114200 Sobic010G160300--Sobic001G114200 Sobic001G501900 Sobic001G501900 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic010G160300--Sobic001G149000 Sobic009G201000 Sobic009G201000 Sobic006G156400--Sobic009G201000 Sobic008G141100 Sobic008G141100 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic009G202000 Sobic009G202000 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic001G387300 Sobic001G387300 Sobic006G156400--Sobic001G387300 Sobic001G073700 Sobic001G073700 Sobic006G156400--Sobic001G073700 Sobic009G113500 Sobic009G113500 Sobic006G156400--Sobic009G113500 Sobic002G414800 Sobic002G414800 Sobic001G280500--Sobic002G414800 Sobic001G280500--Sobic001G149000 Sobic001G280500--Sobic005G063200 Sobic001G384200 Sobic001G384200 Sobic001G280500--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic006G265800 Sobic006G265800 Sobic001G280500--Sobic006G265800 Sobic003G385300--Sobic001G149000 Sobic003G402800 Sobic003G402800 Sobic003G385300--Sobic003G402800 Sobic003G385300--Sobic004G077300 Sobic004G064200 Sobic004G064200 Sobic003G385300--Sobic004G064200 Sobic004G176200 Sobic004G176200 Sobic003G385300--Sobic004G176200 Sobic001G257800 Sobic001G257800 Sobic003G385300--Sobic001G257800 Sobic005G225500 Sobic005G225500 Sobic003G385300--Sobic005G225500 Sobic007G039200 Sobic007G039200 Sobic003G385300--Sobic007G039200 Sobic002G074800 Sobic002G074800 Sobic003G385300--Sobic002G074800 Sobic001G149000--Sobic004G077300 Sobic008G152700 Sobic008G152700 Sobic001G149000--Sobic008G152700 Sobic001G149000--Sobic003G385300 Sobic009G046900 Sobic009G046900 Sobic001G149000--Sobic009G046900 Sobic001G149000--Sobic001G384200 Sobic001G149000--Sobic009G178400 Sobic001G149000--Sobic001G280500 Sobic001G149000--Sobic008G166100 Sobic001G149000--Sobic001G387300 Sobic004G077300--Sobic001G149000 Sobic004G077300--Sobic003G385300 Sobic004G077300--Sobic008G152700 Sobic004G077300--Sobic004G176200 Sobic001G378800 Sobic001G378800 Sobic004G077300--Sobic001G378800 Sobic006G080700 Sobic006G080700 Sobic004G077300--Sobic006G080700 Sobic004G077300--Sobic001G384200 Sobic004G077300--Sobic004G350700 Sobic002G180800 Sobic002G180800 Sobic004G077300--Sobic002G180800 Sobic002G007800--Sobic002G304700 Sobic002G007800--Sobic009G106700 Sobic002G007800--Sobic010G160300 Sobic010G095400 Sobic010G095400 Sobic002G007800--Sobic010G095400 Sobic006G166400 Sobic006G166400 Sobic002G007800--Sobic006G166400 Sobic002G007800--Sobic001G501900 Sobic002G057400 Sobic002G057400 Sobic002G007800--Sobic002G057400 Sobic003G211800 Sobic003G211800 Sobic002G007800--Sobic003G211800 Sobic002G007800--Sobic003G385300 Sobic009G106700--Sobic003G211800 Sobic006G162500 Sobic006G162500 Sobic009G106700--Sobic006G162500 Sobic009G145000 Sobic009G145000 Sobic009G106700--Sobic009G145000 Sobic004G328200 Sobic004G328200 Sobic009G106700--Sobic004G328200 Sobic002G418300 Sobic002G418300 Sobic009G106700--Sobic002G418300 Sobic009G106700--Sobic009G113500 Sobic004G203150 Sobic004G203150 Sobic009G106700--Sobic004G203150 Sobic002G189500 Sobic002G189500 Sobic009G106700--Sobic002G189500 Sobic009G106700--Sobic005G225500 Sobic005G063200--Sobic001G384200 Sobic005G063200--Sobic001G280500 Sobic005G063200--Sobic008G166100 Sobic005G063200--Sobic003G211800 Sobic005G063200--Sobic001G149000 Sobic001G076600 Sobic001G076600 Sobic005G063200--Sobic001G076600 Sobic002G097200 Sobic002G097200 Sobic005G063200--Sobic002G097200 Sobic005G063200--Sobic003G385300 Sobic005G063200--Sobic009G106700
Octagon: transcription factors


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