Gene annotation
Transcriptome id Sobic.002G368100.1
Synonym Sb02g038720, COBL1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
COBRA, putative, expressed
UniProt C5XDW0
Pfam PF04833
Panther DB PTHR31673 PTHR31673:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT3G02210 : COBRA-like protein 1 precursor
RAP-DB (Rice) LOC_Os07g41310.1 : COBRA, putative, expressed
MaizeGDB (Corn) Zm00025a048696
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G368100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
2 Sobic.001G490950 - -
3 Sobic.008G141600 expressed protein -
4 Sobic.001G226900 zinc finger family protein, putative, expressed -
5 Sobic.010G006800 auxin-induced protein 5NG4, putative, expressed -
6 Sobic.010G134700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@peptidyl-prolyl isomerase, putative, expressed K09571: FK506-binding protein 4/5
7 Sobic.002G102300 - -
8 Sobic.003G238250 - -
9 Sobic.007G101600 - -
10 Sobic.008G057600 WD-40 repeat family protein, putative, expressed -
11 Sobic.003G392275 - -
12 Sobic.003G211800 expressed protein -
13 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
14 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
15 Sobic.004G038500 cyclin-related protein, putative, expressed -
16 Sobic.010G095400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@urea active transporter, putative, expressed -
17 Sobic.007G138000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
18 Sobic.005G134000 expressed protein -
19 Sobic.003G234701 - -
20 Sobic.001G286900 - -


Gene co-expression network
sample Sobic002G368100 Sobic002G368100 Sobic004G074900 Sobic004G074900 Sobic002G368100--Sobic004G074900 Sobic001G490950 Sobic001G490950 Sobic002G368100--Sobic001G490950 Sobic008G141600 Sobic008G141600 Sobic002G368100--Sobic008G141600 Sobic001G226900 Sobic001G226900 Sobic002G368100--Sobic001G226900 Sobic010G006800 Sobic010G006800 Sobic002G368100--Sobic010G006800 Sobic010G134700 Sobic010G134700 Sobic002G368100--Sobic010G134700 Sobic002G102300 Sobic002G102300 Sobic002G368100--Sobic002G102300 Sobic003G238250 Sobic003G238250 Sobic002G368100--Sobic003G238250 Sobic007G101600 Sobic007G101600 Sobic002G368100--Sobic007G101600 Sobic004G074900--Sobic007G101600 Sobic004G074900--Sobic008G141600 Sobic004G074900--Sobic003G238250 Sobic004G074900--Sobic002G102300 Sobic001G286900 Sobic001G286900 Sobic004G074900--Sobic001G286900 Sobic006G267100 Sobic006G267100 Sobic004G074900--Sobic006G267100 Sobic004G038500 Sobic004G038500 Sobic004G074900--Sobic004G038500 Sobic007G138000 Sobic007G138000 Sobic004G074900--Sobic007G138000 Sobic004G074900--Sobic010G006800 Sobic001G490950--Sobic002G102300 Sobic001G490950--Sobic010G006800 Sobic001G490950--Sobic004G074900 Sobic001G490950--Sobic007G101600 Sobic003G392275 Sobic003G392275 Sobic001G490950--Sobic003G392275 Sobic001G490950--Sobic003G238250 Sobic001G490950--Sobic001G226900 Sobic001G490950--Sobic002G368100 Sobic001G490950--Sobic007G138000 Sobic008G141600--Sobic004G074900 Sobic008G141600--Sobic003G238250 Sobic008G141600--Sobic002G368100 Sobic008G141600--Sobic007G101600 Sobic008G141600--Sobic010G006800 Sobic008G141600--Sobic001G490950 Sobic008G141600--Sobic002G102300 Sobic008G141600--Sobic006G267100 Sobic008G141600--Sobic007G138000 Sobic008G057600 Sobic008G057600 Sobic001G226900--Sobic008G057600 Sobic001G226900--Sobic003G392275 Sobic001G226900--Sobic001G490950 Sobic008G056800 Sobic008G056800 Sobic001G226900--Sobic008G056800 Sobic002G304801 Sobic002G304801 Sobic001G226900--Sobic002G304801 Sobic001G226900--Sobic002G102300 Sobic002G099700 Sobic002G099700 Sobic001G226900--Sobic002G099700 Sobic001G226900--Sobic010G006800 Sobic001G226900--Sobic004G074900 Sobic010G006800--Sobic003G238250 Sobic010G006800--Sobic007G101600 Sobic010G006800--Sobic002G102300 Sobic010G006800--Sobic001G490950 Sobic010G006800--Sobic004G074900 Sobic010G006800--Sobic007G138000 Sobic010G006800--Sobic001G286900 Sobic010G006800--Sobic008G057600 Sobic010G006800--Sobic003G392275 Sobic004G098800 Sobic004G098800 Sobic010G134700--Sobic004G098800 Sobic003G385000 Sobic003G385000 Sobic010G134700--Sobic003G385000 Sobic010G134700--Sobic002G368100 Sobic010G134700--Sobic010G006800 Sobic010G134700--Sobic008G141600 Sobic010G134700--Sobic004G074900 Sobic010G134700--Sobic003G238250 Sobic010G134700--Sobic003G392275 Sobic004G178700 Sobic004G178700 Sobic010G134700--Sobic004G178700 Sobic002G102300--Sobic010G006800 Sobic002G102300--Sobic007G101600 Sobic002G102300--Sobic003G238250 Sobic002G102300--Sobic001G490950 Sobic002G102300--Sobic004G074900 Sobic002G102300--Sobic003G392275 Sobic004G140400 Sobic004G140400 Sobic002G102300--Sobic004G140400 Sobic002G102300--Sobic001G286900 Sobic002G102300--Sobic007G138000 Sobic003G238250--Sobic007G101600 Sobic003G238250--Sobic010G006800 Sobic003G238250--Sobic001G286900 Sobic003G238250--Sobic002G102300 Sobic003G238250--Sobic004G074900 Sobic003G238250--Sobic007G138000 Sobic002G257001 Sobic002G257001 Sobic003G238250--Sobic002G257001 Sobic005G135100 Sobic005G135100 Sobic003G238250--Sobic005G135100 Sobic005G225500 Sobic005G225500 Sobic003G238250--Sobic005G225500 Sobic007G101600--Sobic001G286900 Sobic007G101600--Sobic007G138000 Sobic007G101600--Sobic005G135100 Sobic007G101600--Sobic003G238250 Sobic007G101600--Sobic002G257001 Sobic004G042501 Sobic004G042501 Sobic007G101600--Sobic004G042501 Sobic007G101600--Sobic010G006800 Sobic002G106600 Sobic002G106600 Sobic007G101600--Sobic002G106600 Sobic007G070900 Sobic007G070900 Sobic007G101600--Sobic007G070900
Octagon: transcription factors


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