Gene annotation
Transcriptome id Sobic.002G377900.1
Synonym Sb02g039500
Functional annotation mitosis protein dim1, putative, expressed
UniProt C5X2G0
Pfam PF02966
Panther DB PTHR12052:SF4 PTHR12052
NCBI CDD KOG3414; Component of the U4/U6.U5 snRNP/mitosis protein DIM1
KEGG Orthology -
Gene Ontology GO:0000398; mRNA splicing, via spliceosome GO:0005681spliceosomal complex


Orthologs (automatic annotation)
TAIR AT3G24730 : mRNA splicing factor, thioredoxin-like U5 snRNP
RAP-DB (Rice) LOC_Os11g19220.1 : mitosis protein dim1, putative, expressed
MaizeGDB (Corn) Zm00025a048776
Brachypodium KQJ88662 , KQJ88663 , KQJ88660 , KQJ88661 , PNT63720 , PNT63721 , PNT63719 , PNT63718
Barley HORVU4Hr1G012340.4 , HORVU4Hr1G012340.5 , HORVU4Hr1G012340.2 , HORVU4Hr1G012340.3 , HORVU4Hr1G012340.1 , HORVU4Hr1G069730.1
Wheat TraesCS4B02G074200 , TraesCS4A02G240800 , TraesCS4D02G072700 , TraesCS4D02G072700
Populus -


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cDNA sequences
Sobic.002G377900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G328100 expressed protein -
2 Sobic.002G304500 mutS family domain IV containing protein, expressed K08740: DNA mismatch repair protein MSH4
3 Sobic.005G063200 expressed protein -
4 Sobic.004G064800 haemolysin-III, putative, expressed K07297: adiponectin receptor
5 Sobic.008G007800 - -
6 Sobic.001G280500 abscisic acid insensitive 8, putative, expressed -
7 Sobic.010G160300 RNA recognition motif containing protein, putative, expressed -
8 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
9 Sobic.008G007700 expressed protein -
10 Sobic.003G214850 - -
11 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
12 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
13 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
14 Sobic.005G201200 - -
15 Sobic.003G255700 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
16 Sobic.010G198400 expressed protein -
17 Sobic.001G387300 exostosin family domain containing protein, expressed -
18 Sobic.009G048700 expressed protein -
19 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
20 Sobic.001G080800 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase


Gene co-expression network
sample Sobic002G377900 Sobic002G377900 Sobic004G328100 Sobic004G328100 Sobic002G377900--Sobic004G328100 Sobic002G304500 Sobic002G304500 Sobic002G377900--Sobic002G304500 Sobic005G063200 Sobic005G063200 Sobic002G377900--Sobic005G063200 Sobic004G064800 Sobic004G064800 Sobic002G377900--Sobic004G064800 Sobic008G007800 Sobic008G007800 Sobic002G377900--Sobic008G007800 Sobic001G280500 Sobic001G280500 Sobic002G377900--Sobic001G280500 Sobic010G160300 Sobic010G160300 Sobic002G377900--Sobic010G160300 Sobic002G348400 Sobic002G348400 Sobic002G377900--Sobic002G348400 Sobic008G007700 Sobic008G007700 Sobic002G377900--Sobic008G007700 Sobic004G328100--Sobic002G304500 Sobic002G382100 Sobic002G382100 Sobic004G328100--Sobic002G382100 Sobic004G328100--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic004G328100--Sobic002G361500 Sobic005G201200 Sobic005G201200 Sobic004G328100--Sobic005G201200 Sobic004G328100--Sobic002G377900 Sobic002G016000 Sobic002G016000 Sobic004G328100--Sobic002G016000 Sobic001G080800 Sobic001G080800 Sobic004G328100--Sobic001G080800 Sobic010G198400 Sobic010G198400 Sobic004G328100--Sobic010G198400 Sobic002G304500--Sobic004G064800 Sobic002G304500--Sobic005G201200 Sobic002G304500--Sobic008G007800 Sobic010G255400 Sobic010G255400 Sobic002G304500--Sobic010G255400 Sobic002G304500--Sobic002G016000 Sobic006G199500 Sobic006G199500 Sobic002G304500--Sobic006G199500 Sobic002G304500--Sobic004G328100 Sobic002G304500--Sobic008G007700 Sobic004G038400 Sobic004G038400 Sobic002G304500--Sobic004G038400 Sobic001G384200 Sobic001G384200 Sobic005G063200--Sobic001G384200 Sobic005G063200--Sobic001G280500 Sobic008G166100 Sobic008G166100 Sobic005G063200--Sobic008G166100 Sobic003G211800 Sobic003G211800 Sobic005G063200--Sobic003G211800 Sobic001G149000 Sobic001G149000 Sobic005G063200--Sobic001G149000 Sobic001G076600 Sobic001G076600 Sobic005G063200--Sobic001G076600 Sobic002G097200 Sobic002G097200 Sobic005G063200--Sobic002G097200 Sobic003G385300 Sobic003G385300 Sobic005G063200--Sobic003G385300 Sobic009G106700 Sobic009G106700 Sobic005G063200--Sobic009G106700 Sobic004G064800--Sobic008G007800 Sobic004G064800--Sobic002G304500 Sobic004G064800--Sobic005G201200 Sobic004G064800--Sobic010G255400 Sobic004G064800--Sobic006G199500 Sobic009G048700 Sobic009G048700 Sobic004G064800--Sobic009G048700 Sobic004G064800--Sobic008G007700 Sobic004G064800--Sobic002G016000 Sobic009G006700 Sobic009G006700 Sobic004G064800--Sobic009G006700 Sobic008G007800--Sobic004G064800 Sobic008G007800--Sobic005G201200 Sobic008G007800--Sobic009G048700 Sobic008G007800--Sobic006G199500 Sobic008G007800--Sobic009G006700 Sobic009G145000 Sobic009G145000 Sobic008G007800--Sobic009G145000 Sobic008G007800--Sobic010G255400 Sobic002G243400 Sobic002G243400 Sobic008G007800--Sobic002G243400 Sobic009G008000 Sobic009G008000 Sobic008G007800--Sobic009G008000 Sobic002G414800 Sobic002G414800 Sobic001G280500--Sobic002G414800 Sobic001G280500--Sobic001G149000 Sobic001G280500--Sobic005G063200 Sobic001G280500--Sobic001G384200 Sobic001G280500--Sobic008G166100 Sobic008G022400 Sobic008G022400 Sobic001G280500--Sobic008G022400 Sobic001G280500--Sobic010G160300 Sobic001G424800 Sobic001G424800 Sobic001G280500--Sobic001G424800 Sobic006G265800 Sobic006G265800 Sobic001G280500--Sobic006G265800 Sobic002G304700 Sobic002G304700 Sobic010G160300--Sobic002G304700 Sobic010G160300--Sobic001G280500 Sobic010G160300--Sobic005G063200 Sobic001G114200 Sobic001G114200 Sobic010G160300--Sobic001G114200 Sobic001G501900 Sobic001G501900 Sobic010G160300--Sobic001G501900 Sobic004G350700 Sobic004G350700 Sobic010G160300--Sobic004G350700 Sobic002G007800 Sobic002G007800 Sobic010G160300--Sobic002G007800 Sobic003G117800 Sobic003G117800 Sobic010G160300--Sobic003G117800 Sobic010G160300--Sobic001G149000 Sobic010G153400 Sobic010G153400 Sobic002G348400--Sobic010G153400 Sobic002G392400 Sobic002G392400 Sobic002G348400--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic002G348400--Sobic007G086600 Sobic001G117900 Sobic001G117900 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic001G309200 Sobic001G309200 Sobic002G348400--Sobic001G309200 Sobic002G348400--Sobic001G280500 Sobic003G004800 Sobic003G004800 Sobic002G348400--Sobic003G004800 Sobic001G188000 Sobic001G188000 Sobic002G348400--Sobic001G188000 Sobic008G007700--Sobic008G007800 Sobic008G007700--Sobic004G064800 Sobic008G007700--Sobic009G048700 Sobic008G007700--Sobic006G199500 Sobic003G218000 Sobic003G218000 Sobic008G007700--Sobic003G218000 Sobic008G007700--Sobic010G198400 Sobic008G007700--Sobic009G008000 Sobic010G038000 Sobic010G038000 Sobic008G007700--Sobic010G038000 Sobic008G007700--Sobic009G145000
Octagon: transcription factors


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