Gene annotation
Transcriptome id Sobic.003G250400.2,Sobic.003G250400.1
Synonym Sb03g030660
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6Q576 , C5XG08
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF16 PTHR22763:SF16 PTHR22763
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding GO:0008270zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G15070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g47740.3 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036612 , Zm00025a038761 , Zm00025a044574
Brachypodium KQK09103 , KQK09102
Barley HORVU3Hr1G061010.5 , HORVU3Hr1G061010.4 , HORVU3Hr1G061010.3 , HORVU3Hr1G061010.14 , HORVU3Hr1G061010.13 , HORVU3Hr1G061010.10 , HORVU3Hr1G061010.9 , HORVU3Hr1G061010.8 , HORVU3Hr1G061010.7 , HORVU3Hr1G061010.6 , HORVU3Hr1G061010.2
Wheat TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS1A02G398300 , TraesCS3A02G246900 , TraesCS3A02G246900 , TraesCS3A02G246900 , TraesCS3A02G246900 , TraesCS3A02G246900 , TraesCS1A02G398300 , TraesCS3D02G244600 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS1D02G405800 , TraesCS3D02G244600 , TraesCS3D02G244600 , TraesCS3D02G244600 , TraesCS3D02G244600 , TraesCS1D02G405800 , TraesCS3B02G272400 , TraesCS3B02G272400 , TraesCS3B02G272400 , TraesCS3B02G272400 , TraesCS3B02G272400
Populus -


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cDNA sequences
Sobic.003G250400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
2 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
3 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
4 Sobic.003G428000 expressed protein -
5 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
6 Sobic.010G024400 expressed protein -
7 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
8 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
10 Sobic.004G302800 MSP domain containing protein, expressed -
11 Sobic.004G004100 nucleic acid binding protein, putative, expressed -
12 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
13 Sobic.002G074800 - -
14 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
15 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
16 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
17 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
18 Sobic.001G057400 expressed protein -
19 Sobic.004G064200 STE_PAK_Ste20_STLK.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
20 Sobic.001G424800 myosin heavy chain-related, putative, expressed -


Gene co-expression network
sample Sobic003G250400 Sobic003G250400 Sobic001G475300 Sobic001G475300 Sobic003G250400--Sobic001G475300 Sobic003G198900 Sobic003G198900 Sobic003G250400--Sobic003G198900 Sobic001G257800 Sobic001G257800 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic010G181600 Sobic010G181600 Sobic003G250400--Sobic010G181600 Sobic003G117800 Sobic003G117800 Sobic003G250400--Sobic003G117800 Sobic001G141400 Sobic001G141400 Sobic003G250400--Sobic001G141400 Sobic001G475300--Sobic003G250400 Sobic001G475300--Sobic010G181600 Sobic001G475300--Sobic001G141400 Sobic001G475300--Sobic003G117800 Sobic007G172700 Sobic007G172700 Sobic001G475300--Sobic007G172700 Sobic002G355800 Sobic002G355800 Sobic001G475300--Sobic002G355800 Sobic003G058500 Sobic003G058500 Sobic001G475300--Sobic003G058500 Sobic008G152700 Sobic008G152700 Sobic001G475300--Sobic008G152700 Sobic004G302800 Sobic004G302800 Sobic001G475300--Sobic004G302800 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic006G270000 Sobic006G270000 Sobic003G198900--Sobic006G270000 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic008G069300 Sobic008G069300 Sobic003G198900--Sobic008G069300 Sobic004G213300 Sobic004G213300 Sobic003G198900--Sobic004G213300 Sobic003G402800 Sobic003G402800 Sobic001G257800--Sobic003G402800 Sobic003G385300 Sobic003G385300 Sobic001G257800--Sobic003G385300 Sobic010G134650 Sobic010G134650 Sobic001G257800--Sobic010G134650 Sobic004G064200 Sobic004G064200 Sobic001G257800--Sobic004G064200 Sobic001G257800--Sobic010G024400 Sobic004G176200 Sobic004G176200 Sobic001G257800--Sobic004G176200 Sobic001G257800--Sobic002G074800 Sobic004G261700 Sobic004G261700 Sobic001G257800--Sobic004G261700 Sobic001G257800--Sobic008G152700 Sobic001G149000 Sobic001G149000 Sobic003G428000--Sobic001G149000 Sobic009G046900 Sobic009G046900 Sobic003G428000--Sobic009G046900 Sobic004G194400 Sobic004G194400 Sobic003G428000--Sobic004G194400 Sobic003G428000--Sobic008G152700 Sobic010G274800 Sobic010G274800 Sobic003G428000--Sobic010G274800 Sobic009G252300 Sobic009G252300 Sobic003G428000--Sobic009G252300 Sobic003G428000--Sobic003G385300 Sobic003G428000--Sobic004G082800 Sobic003G428000--Sobic002G074800 Sobic006G117700 Sobic006G117700 Sobic004G082800--Sobic006G117700 Sobic004G082800--Sobic010G024400 Sobic010G202200 Sobic010G202200 Sobic004G082800--Sobic010G202200 Sobic010G130601 Sobic010G130601 Sobic004G082800--Sobic010G130601 Sobic005G110424 Sobic005G110424 Sobic004G082800--Sobic005G110424 Sobic009G230800 Sobic009G230800 Sobic004G082800--Sobic009G230800 Sobic001G024400 Sobic001G024400 Sobic004G082800--Sobic001G024400 Sobic004G082800--Sobic004G064200 Sobic001G519600 Sobic001G519600 Sobic004G082800--Sobic001G519600 Sobic010G024400--Sobic010G202200 Sobic010G024400--Sobic009G230800 Sobic003G236000 Sobic003G236000 Sobic010G024400--Sobic003G236000 Sobic010G024400--Sobic004G064200 Sobic010G024400--Sobic001G519600 Sobic006G269101 Sobic006G269101 Sobic010G024400--Sobic006G269101 Sobic008G148600 Sobic008G148600 Sobic010G024400--Sobic008G148600 Sobic005G225500 Sobic005G225500 Sobic010G024400--Sobic005G225500 Sobic010G024400--Sobic001G024400 Sobic010G181600--Sobic003G058500 Sobic001G424800 Sobic001G424800 Sobic010G181600--Sobic001G424800 Sobic010G181600--Sobic003G117800 Sobic010G181600--Sobic001G475300 Sobic008G006000 Sobic008G006000 Sobic010G181600--Sobic008G006000 Sobic003G353700 Sobic003G353700 Sobic010G181600--Sobic003G353700 Sobic007G218600 Sobic007G218600 Sobic010G181600--Sobic007G218600 Sobic004G004100 Sobic004G004100 Sobic010G181600--Sobic004G004100 Sobic010G181600--Sobic003G250400 Sobic003G117800--Sobic001G424800 Sobic003G117800--Sobic003G385300 Sobic003G394500 Sobic003G394500 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic001G385000 Sobic001G385000 Sobic003G117800--Sobic001G385000 Sobic003G117800--Sobic009G046900 Sobic001G141400--Sobic001G475300 Sobic001G141400--Sobic009G252300 Sobic001G141400--Sobic003G250400 Sobic009G194000 Sobic009G194000 Sobic001G141400--Sobic009G194000 Sobic003G190200 Sobic003G190200 Sobic001G141400--Sobic003G190200 Sobic001G141400--Sobic007G172700 Sobic001G490900 Sobic001G490900 Sobic001G141400--Sobic001G490900 Sobic002G200000 Sobic002G200000 Sobic001G141400--Sobic002G200000 Sobic003G039900 Sobic003G039900 Sobic001G141400--Sobic003G039900
Octagon: transcription factors


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