Gene annotation
Transcriptome id Sobic.004G259300.2,Sobic.004G259300.1
Synonym Sb04g029760
Functional annotation Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
UniProt A0A1Z5RP22 , C5XZU9
Pfam PF13639
Panther DB PTHR11224 PTHR11224:SF10
NCBI CDD KOG1039; Predicted E3 ubiquitin ligase
KEGG Orthology K15687; E3 ubiquitin-protein ligase makorin
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G08505 : zinc finger (CCCH-type/C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os06g21390.2,LOC_Os06g21390.1 : Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021827
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
2 Sobic.004G141400 START domain containing protein, putative, expressed -
3 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
4 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.007G184800 transcription factor RF2a, putative, expressed -
6 Sobic.003G005100 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
7 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
8 Sobic.007G177500 thaumatin, putative, expressed -
9 Sobic.008G006000 expressed protein -
10 Sobic.004G004100 nucleic acid binding protein, putative, expressed -
11 Sobic.002G203600 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
12 Sobic.004G016100 expressed protein -
13 Sobic.001G521700 - -
14 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
15 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
16 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
17 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
18 Sobic.006G252400 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
19 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
20 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G259300 Sobic004G259300 Sobic004G218300 Sobic004G218300 Sobic004G259300--Sobic004G218300 Sobic004G141400 Sobic004G141400 Sobic004G259300--Sobic004G141400 Sobic007G192400 Sobic007G192400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic007G184800 Sobic007G184800 Sobic004G259300--Sobic007G184800 Sobic003G005100 Sobic003G005100 Sobic004G259300--Sobic003G005100 Sobic007G077532 Sobic007G077532 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic008G006000 Sobic008G006000 Sobic004G259300--Sobic008G006000 Sobic003G398400 Sobic003G398400 Sobic004G218300--Sobic003G398400 Sobic006G130200 Sobic006G130200 Sobic004G218300--Sobic006G130200 Sobic004G218300--Sobic004G259300 Sobic009G228400 Sobic009G228400 Sobic004G218300--Sobic009G228400 Sobic006G215100 Sobic006G215100 Sobic004G218300--Sobic006G215100 Sobic003G407100 Sobic003G407100 Sobic004G218300--Sobic003G407100 Sobic004G218300--Sobic007G192400 Sobic002G147100 Sobic002G147100 Sobic004G218300--Sobic002G147100 Sobic002G317400 Sobic002G317400 Sobic004G218300--Sobic002G317400 Sobic004G141400--Sobic007G077532 Sobic004G141400--Sobic008G006000 Sobic010G181600 Sobic010G181600 Sobic004G141400--Sobic010G181600 Sobic004G141400--Sobic004G259300 Sobic004G141400--Sobic007G192400 Sobic001G356200 Sobic001G356200 Sobic004G141400--Sobic001G356200 Sobic004G004100 Sobic004G004100 Sobic004G141400--Sobic004G004100 Sobic003G117800 Sobic003G117800 Sobic004G141400--Sobic003G117800 Sobic003G353700 Sobic003G353700 Sobic004G141400--Sobic003G353700 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G192400--Sobic007G077532 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic007G192400--Sobic004G141400 Sobic001G475300 Sobic001G475300 Sobic003G250400--Sobic001G475300 Sobic003G198900 Sobic003G198900 Sobic003G250400--Sobic003G198900 Sobic001G257800 Sobic001G257800 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic003G250400--Sobic010G181600 Sobic003G250400--Sobic003G117800 Sobic001G141400 Sobic001G141400 Sobic003G250400--Sobic001G141400 Sobic003G091600 Sobic003G091600 Sobic007G184800--Sobic003G091600 Sobic003G213000 Sobic003G213000 Sobic007G184800--Sobic003G213000 Sobic003G289100 Sobic003G289100 Sobic007G184800--Sobic003G289100 Sobic007G184800--Sobic004G259300 Sobic007G184800--Sobic004G082800 Sobic001G519600 Sobic001G519600 Sobic007G184800--Sobic001G519600 Sobic010G202200 Sobic010G202200 Sobic007G184800--Sobic010G202200 Sobic009G230800 Sobic009G230800 Sobic007G184800--Sobic009G230800 Sobic010G146000 Sobic010G146000 Sobic007G184800--Sobic010G146000 Sobic002G113200 Sobic002G113200 Sobic003G005100--Sobic002G113200 Sobic003G212000 Sobic003G212000 Sobic003G005100--Sobic003G212000 Sobic006G252400 Sobic006G252400 Sobic003G005100--Sobic006G252400 Sobic003G284100 Sobic003G284100 Sobic003G005100--Sobic003G284100 Sobic010G161000 Sobic010G161000 Sobic003G005100--Sobic010G161000 Sobic003G234500 Sobic003G234500 Sobic003G005100--Sobic003G234500 Sobic003G005100--Sobic003G353700 Sobic007G219500 Sobic007G219500 Sobic003G005100--Sobic007G219500 Sobic003G005100--Sobic004G259300 Sobic007G077532--Sobic004G141400 Sobic001G057400 Sobic001G057400 Sobic007G077532--Sobic001G057400 Sobic007G077532--Sobic007G192400 Sobic007G077532--Sobic004G004100 Sobic005G185500 Sobic005G185500 Sobic007G077532--Sobic005G185500 Sobic007G077532--Sobic010G181600 Sobic007G077532--Sobic003G353700 Sobic007G077532--Sobic008G006000 Sobic007G077532--Sobic003G117800 Sobic007G177500--Sobic004G259300 Sobic004G016100 Sobic004G016100 Sobic007G177500--Sobic004G016100 Sobic004G116600 Sobic004G116600 Sobic007G177500--Sobic004G116600 Sobic007G177500--Sobic003G005100 Sobic007G177500--Sobic007G192400 Sobic007G177500--Sobic004G218300 Sobic007G177500--Sobic007G077532 Sobic001G281700 Sobic001G281700 Sobic007G177500--Sobic001G281700 Sobic007G177500--Sobic006G130200 Sobic008G006000--Sobic010G181600 Sobic008G006000--Sobic007G192400 Sobic008G006000--Sobic003G353700 Sobic008G006000--Sobic004G141400 Sobic008G006000--Sobic007G077532 Sobic010G255900 Sobic010G255900 Sobic008G006000--Sobic010G255900 Sobic008G006000--Sobic005G185500 Sobic008G006000--Sobic003G117800 Sobic001G280500 Sobic001G280500 Sobic008G006000--Sobic001G280500
Octagon: transcription factors


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