Gene annotation
Transcriptome id Sobic.002G203600.1
Synonym Sb02g024820
Functional annotation protein binding protein, putative, expressed
UniProt C5XCV3
Pfam PF00097 PF01485
Panther DB PTHR11685 PTHR11685:SF140
NCBI CDD -
KEGG Orthology K11975; E3 ubiquitin-protein ligase RNF144
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G53690 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g25260.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047011
Brachypodium KQJ90263
Barley -
Wheat TraesCS5D02G231800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G123400 expressed protein -
2 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
3 Sobic.003G091600 expressed protein -
4 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
5 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
6 Sobic.009G227100 expressed protein -
7 Sobic.010G237650 - -
8 Sobic.007G184800 transcription factor RF2a, putative, expressed -
9 Sobic.001G521700 - -
10 Sobic.009G228400 lipase-related, putative, expressed -
11 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
12 Sobic.009G252300 expressed protein -
13 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
14 Sobic.010G035801 - -
15 Sobic.003G428000 expressed protein -
16 Sobic.005G170000 expressed protein -
17 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
18 Sobic.008G006000 expressed protein -
19 Sobic.004G042900 VIL2 protein, putative, expressed -
20 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -


Gene co-expression network
sample Sobic002G203600 Sobic002G203600 Sobic005G123400 Sobic005G123400 Sobic002G203600--Sobic005G123400 Sobic007G192400 Sobic007G192400 Sobic002G203600--Sobic007G192400 Sobic003G091600 Sobic003G091600 Sobic002G203600--Sobic003G091600 Sobic004G259300 Sobic004G259300 Sobic002G203600--Sobic004G259300 Sobic003G353700 Sobic003G353700 Sobic002G203600--Sobic003G353700 Sobic009G227100 Sobic009G227100 Sobic002G203600--Sobic009G227100 Sobic010G237650 Sobic010G237650 Sobic002G203600--Sobic010G237650 Sobic007G184800 Sobic007G184800 Sobic002G203600--Sobic007G184800 Sobic001G521700 Sobic001G521700 Sobic002G203600--Sobic001G521700 Sobic006G237500 Sobic006G237500 Sobic005G123400--Sobic006G237500 Sobic010G112600 Sobic010G112600 Sobic005G123400--Sobic010G112600 Sobic003G393200 Sobic003G393200 Sobic005G123400--Sobic003G393200 Sobic001G043200 Sobic001G043200 Sobic005G123400--Sobic001G043200 Sobic005G123400--Sobic009G227100 Sobic009G252300 Sobic009G252300 Sobic005G123400--Sobic009G252300 Sobic007G030100 Sobic007G030100 Sobic005G123400--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic005G123400--Sobic003G190200 Sobic003G368400 Sobic003G368400 Sobic005G123400--Sobic003G368400 Sobic007G192400--Sobic003G353700 Sobic008G006000 Sobic008G006000 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic010G181600 Sobic010G181600 Sobic007G192400--Sobic010G181600 Sobic007G192400--Sobic009G252300 Sobic007G192400--Sobic004G259300 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400 Sobic003G091600--Sobic007G184800 Sobic003G289100 Sobic003G289100 Sobic003G091600--Sobic003G289100 Sobic003G213000 Sobic003G213000 Sobic003G091600--Sobic003G213000 Sobic008G155400 Sobic008G155400 Sobic003G091600--Sobic008G155400 Sobic003G091600--Sobic002G203600 Sobic010G146000 Sobic010G146000 Sobic003G091600--Sobic010G146000 Sobic003G091600--Sobic008G036600 Sobic003G091600--Sobic007G192400 Sobic001G519600 Sobic001G519600 Sobic003G091600--Sobic001G519600 Sobic004G218300 Sobic004G218300 Sobic004G259300--Sobic004G218300 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic004G259300--Sobic007G184800 Sobic003G005100 Sobic003G005100 Sobic004G259300--Sobic003G005100 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic004G259300--Sobic008G006000 Sobic003G353700--Sobic007G192400 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic001G024400 Sobic001G024400 Sobic003G353700--Sobic001G024400 Sobic007G039200 Sobic007G039200 Sobic003G353700--Sobic007G039200 Sobic003G353700--Sobic010G181600 Sobic003G236000 Sobic003G236000 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic003G353700--Sobic008G006000 Sobic009G227100--Sobic005G123400 Sobic009G227100--Sobic001G043200 Sobic009G199500 Sobic009G199500 Sobic009G227100--Sobic009G199500 Sobic006G220400 Sobic006G220400 Sobic009G227100--Sobic006G220400 Sobic009G227100--Sobic009G252300 Sobic001G052100 Sobic001G052100 Sobic009G227100--Sobic001G052100 Sobic004G334200 Sobic004G334200 Sobic009G227100--Sobic004G334200 Sobic009G227100--Sobic003G190200 Sobic009G227100--Sobic010G112600 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic006G144000 Sobic006G144000 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic006G215100 Sobic006G215100 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic005G128000 Sobic005G128000 Sobic010G237650--Sobic005G128000 Sobic009G102000 Sobic009G102000 Sobic010G237650--Sobic009G102000 Sobic007G184800--Sobic003G091600 Sobic007G184800--Sobic003G213000 Sobic007G184800--Sobic003G289100 Sobic007G184800--Sobic004G259300 Sobic004G082800 Sobic004G082800 Sobic007G184800--Sobic004G082800 Sobic007G184800--Sobic001G519600 Sobic010G202200 Sobic010G202200 Sobic007G184800--Sobic010G202200 Sobic009G230800 Sobic009G230800 Sobic007G184800--Sobic009G230800 Sobic007G184800--Sobic010G146000 Sobic001G521700--Sobic007G030100 Sobic002G147200 Sobic002G147200 Sobic001G521700--Sobic002G147200 Sobic002G147100 Sobic002G147100 Sobic001G521700--Sobic002G147100 Sobic001G521700--Sobic004G259300 Sobic006G103700 Sobic006G103700 Sobic001G521700--Sobic006G103700 Sobic001G521700--Sobic009G102000 Sobic006G170900 Sobic006G170900 Sobic001G521700--Sobic006G170900 Sobic001G521700--Sobic002G203600 Sobic001G521700--Sobic005G123400
Octagon: transcription factors


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