Gene annotation
Transcriptome id Sobic.004G218300.1,Sobic.004G218300.2,Sobic.004G218300.3
Synonym PRT1
Functional annotation Zinc finger, ZZ type domain containing protein, expressed
UniProt A0A194YQZ7
Pfam PF00569 PF15227 PF13920
Panther DB PTHR15898 PTHR15898:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G24800 : proteolysis 1
RAP-DB (Rice) LOC_Os02g40810.1 : Zinc finger, ZZ type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021121
Brachypodium KQK00384
Barley HORVU6Hr1G058100.1 , HORVU6Hr1G058100.2 , HORVU6Hr1G058100.3 , HORVU6Hr1G058100.4 , HORVU6Hr1G058100.5 , HORVU6Hr1G058100.6
Wheat TraesCS6D02G209000 , TraesCS6D02G209000 , TraesCS6A02G226100 , TraesCS6A02G226100 , TraesCS6B02G255500
Populus -


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cDNA sequences
Sobic.004G218300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G398400 expressed protein -
2 Sobic.006G130200 expressed protein -
3 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
4 Sobic.009G228400 lipase-related, putative, expressed -
5 Sobic.006G215100 expressed protein -
6 Sobic.003G407100 CBS domain-containing protein, putative, expressed -
7 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
8 Sobic.002G147100 esterase/lipase/thioesterase, putative, expressed -
9 Sobic.002G317400 expressed protein -
10 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
11 Sobic.005G030700 MATH domain containing protein, expressed -
12 Sobic.007G158900 expressed protein -
13 Sobic.008G042600 N-acetylglucosaminyltransferase I, putative, expressed K00726: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
14 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
15 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
16 Sobic.010G073600 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
17 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
18 Sobic.004G141400 START domain containing protein, putative, expressed -
19 Sobic.007G147400 - -
20 Sobic.001G017200 protein transporter, putative, expressed K12275: translocation protein SEC62


Gene co-expression network
sample Sobic004G218300 Sobic004G218300 Sobic003G398400 Sobic003G398400 Sobic004G218300--Sobic003G398400 Sobic006G130200 Sobic006G130200 Sobic004G218300--Sobic006G130200 Sobic004G259300 Sobic004G259300 Sobic004G218300--Sobic004G259300 Sobic009G228400 Sobic009G228400 Sobic004G218300--Sobic009G228400 Sobic006G215100 Sobic006G215100 Sobic004G218300--Sobic006G215100 Sobic003G407100 Sobic003G407100 Sobic004G218300--Sobic003G407100 Sobic007G192400 Sobic007G192400 Sobic004G218300--Sobic007G192400 Sobic002G147100 Sobic002G147100 Sobic004G218300--Sobic002G147100 Sobic002G317400 Sobic002G317400 Sobic004G218300--Sobic002G317400 Sobic003G398400--Sobic004G218300 Sobic003G398400--Sobic006G130200 Sobic004G084500 Sobic004G084500 Sobic003G398400--Sobic004G084500 Sobic003G394200 Sobic003G394200 Sobic003G398400--Sobic003G394200 Sobic002G164300 Sobic002G164300 Sobic003G398400--Sobic002G164300 Sobic010G213500 Sobic010G213500 Sobic003G398400--Sobic010G213500 Sobic010G074900 Sobic010G074900 Sobic003G398400--Sobic010G074900 Sobic004G122900 Sobic004G122900 Sobic003G398400--Sobic004G122900 Sobic003G398400--Sobic003G407100 Sobic006G128800 Sobic006G128800 Sobic006G130200--Sobic006G128800 Sobic006G130200--Sobic004G218300 Sobic010G174800 Sobic010G174800 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic006G130200--Sobic003G398400 Sobic001G425000 Sobic001G425000 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic003G336800 Sobic003G336800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic004G259300--Sobic004G218300 Sobic004G141400 Sobic004G141400 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic007G184800 Sobic007G184800 Sobic004G259300--Sobic007G184800 Sobic003G005100 Sobic003G005100 Sobic004G259300--Sobic003G005100 Sobic007G077532 Sobic007G077532 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic008G006000 Sobic008G006000 Sobic004G259300--Sobic008G006000 Sobic005G030700 Sobic005G030700 Sobic009G228400--Sobic005G030700 Sobic009G228400--Sobic004G218300 Sobic009G228400--Sobic002G147100 Sobic004G111600 Sobic004G111600 Sobic009G228400--Sobic004G111600 Sobic010G035801 Sobic010G035801 Sobic009G228400--Sobic010G035801 Sobic007G147400 Sobic007G147400 Sobic009G228400--Sobic007G147400 Sobic009G228400--Sobic007G192400 Sobic009G228400--Sobic006G130200 Sobic002G203600 Sobic002G203600 Sobic009G228400--Sobic002G203600 Sobic010G073600 Sobic010G073600 Sobic006G215100--Sobic010G073600 Sobic006G215100--Sobic004G218300 Sobic010G237650 Sobic010G237650 Sobic006G215100--Sobic010G237650 Sobic006G048300 Sobic006G048300 Sobic006G215100--Sobic006G048300 Sobic006G215100--Sobic003G398400 Sobic006G215100--Sobic006G130200 Sobic006G215100--Sobic002G147100 Sobic003G402900 Sobic003G402900 Sobic006G215100--Sobic003G402900 Sobic006G215100--Sobic010G074900 Sobic004G067700 Sobic004G067700 Sobic003G407100--Sobic004G067700 Sobic008G042600 Sobic008G042600 Sobic003G407100--Sobic008G042600 Sobic003G407100--Sobic004G218300 Sobic003G407100--Sobic003G398400 Sobic002G370900 Sobic002G370900 Sobic003G407100--Sobic002G370900 Sobic003G008500 Sobic003G008500 Sobic003G407100--Sobic003G008500 Sobic010G041400 Sobic010G041400 Sobic003G407100--Sobic010G041400 Sobic005G045300 Sobic005G045300 Sobic003G407100--Sobic005G045300 Sobic010G005700 Sobic010G005700 Sobic003G407100--Sobic010G005700 Sobic003G353700 Sobic003G353700 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G192400--Sobic007G077532 Sobic010G181600 Sobic010G181600 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic007G192400--Sobic004G259300 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic007G192400--Sobic004G141400 Sobic002G147200 Sobic002G147200 Sobic002G147100--Sobic002G147200 Sobic002G147100--Sobic007G147400 Sobic007G030100 Sobic007G030100 Sobic002G147100--Sobic007G030100 Sobic002G147100--Sobic009G228400 Sobic004G042900 Sobic004G042900 Sobic002G147100--Sobic004G042900 Sobic009G102000 Sobic009G102000 Sobic002G147100--Sobic009G102000 Sobic006G165800 Sobic006G165800 Sobic002G147100--Sobic006G165800 Sobic002G147100--Sobic003G398400 Sobic002G147100--Sobic002G317400 Sobic002G317400--Sobic007G147400 Sobic008G149800 Sobic008G149800 Sobic002G317400--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G317400--SobicK028600 Sobic002G103600 Sobic002G103600 Sobic002G317400--Sobic002G103600 Sobic002G317400--Sobic009G102000 Sobic003G444800 Sobic003G444800 Sobic002G317400--Sobic003G444800 Sobic002G063900 Sobic002G063900 Sobic002G317400--Sobic002G063900 Sobic002G278000 Sobic002G278000 Sobic002G317400--Sobic002G278000 Sobic003G039900 Sobic003G039900 Sobic002G317400--Sobic003G039900
Octagon: transcription factors


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